Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 AL590632.1-201ENST00000424289 371 ntBASIC2.69□□□□□ -1.98
DDX4Q9NQI0 RPS3AP52-201ENST00000435639 297 ntBASIC2.69□□□□□ -1.98
DDX4Q9NQI0 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.69□□□□□ -1.98
DDX4Q9NQI0 RPL39P40-201ENST00000445481 146 ntBASIC2.69□□□□□ -1.98
DDX4Q9NQI0 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.69□□□□□ -1.98
DDX4Q9NQI0 RNU7-26P-201ENST00000458980 63 ntBASIC2.69□□□□□ -1.98
DDX4Q9NQI0 UBL5P3-201ENST00000475112 231 ntBASIC2.69□□□□□ -1.98
DDX4Q9NQI0 AC116337.1-201ENST00000509680 687 ntBASIC2.69□□□□□ -1.98
DDX4Q9NQI0 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.69□□□□□ -1.98
DDX4Q9NQI0 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.69□□□□□ -1.98
DDX4Q9NQI0 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.69□□□□□ -1.98
DDX4Q9NQI0 IMMP1LP2-201ENST00000552954 492 ntBASIC2.69□□□□□ -1.98
DDX4Q9NQI0 AC113139.1-201ENST00000605049 239 ntBASIC2.69□□□□□ -1.98
DDX4Q9NQI0 AL133215.3-201ENST00000609801 448 ntBASIC2.69□□□□□ -1.98
DDX4Q9NQI0 AC104985.2-201ENST00000620598 500 ntBASIC2.69□□□□□ -1.98
DDX4Q9NQI0 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.69□□□□□ -1.98
DDX4Q9NQI0 MTND5P30-201ENST00000452896 1731 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 OR56A5-201ENST00000340110 738 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 SNORD56.1-201ENST00000362913 68 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 RNA5SP393-201ENST00000363423 117 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 SNORA67.3-201ENST00000384366 140 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 RNU6-325P-201ENST00000411132 105 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 HMGN2P3-201ENST00000433603 273 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 HMGN2P5-201ENST00000436882 273 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.68□□□□□ -1.98
DDX4Q9NQI0 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.68□□□□□ -1.98
DDX4Q9NQI0 PCMTD1P1-201ENST00000455560 355 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 RNU7-187P-201ENST00000458985 68 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 RPL9P9-202ENST00000466501 579 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.68□□□□□ -1.98
DDX4Q9NQI0 AC018437.1-201ENST00000492214 406 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.68□□□□□ -1.98
DDX4Q9NQI0 SNORA31.23-201ENST00000517219 133 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.68□□□□□ -1.98
DDX4Q9NQI0 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.68□□□□□ -1.98
DDX4Q9NQI0 AL356157.2-201ENST00000605122 111 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 AC018889.1-201ENST00000605372 397 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 AC124303.1-201ENST00000605703 360 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
DDX4Q9NQI0 AL161423.1-201ENST00000613700 262 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 MIR6766-201ENST00000622641 72 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 MIR6873-201ENST00000622788 63 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 MIR1302-1-201ENST00000637932 143 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 RBBP8P1-201ENST00000449447 1844 ntBASIC2.68□□□□□ -1.98
DDX4Q9NQI0 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
DDX4Q9NQI0 SNORD114-1-201ENST00000362705 72 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 RNU1-51P-201ENST00000365345 176 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 Y_RNA.356-201ENST00000365475 113 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 RNU6-622P-201ENST00000384272 103 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 Y_RNA.482-201ENST00000384377 111 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.67□□□□□ -1.98
DDX4Q9NQI0 Z98742.2-201ENST00000431564 187 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 FABP5P14-201ENST00000437273 393 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.67□□□□□ -1.98
DDX4Q9NQI0 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.67□□□□□ -1.98
DDX4Q9NQI0 RNU6-1016P-201ENST00000516689 94 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.67□□□□□ -1.98
DDX4Q9NQI0 RAB11AP2-201ENST00000545905 639 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 RPS3AP23-202ENST00000574601 686 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 MTCO3P13-201ENST00000577757 781 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 CPDP1-201ENST00000579660 283 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC2.67□□□□□ -1.98
DDX4Q9NQI0 AC090897.2-201ENST00000581715 130 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 MIR3616-201ENST00000584070 92 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.67□□□□□ -1.98
DDX4Q9NQI0 AL117336.2-201ENST00000602435 335 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.67□□□□□ -1.98
DDX4Q9NQI0 AC241585.2-209ENST00000638217 143 ntBASIC2.67□□□□□ -1.98
DDX4Q9NQI0 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.67□□□□□ -1.98
DDX4Q9NQI0 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
DDX4Q9NQI0 Y_RNA.384-201ENST00000383909 102 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 Y_RNA.474-201ENST00000384341 102 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 RNU6-790P-201ENST00000384479 105 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 Y_RNA.529-201ENST00000384586 119 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 MIR517A-201ENST00000385001 87 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
DDX4Q9NQI0 AP000275.1-201ENST00000411943 390 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 AC007969.2-201ENST00000441891 191 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 AP001025.1-201ENST00000486139 332 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 AC090096.1-201ENST00000489168 390 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 RPL22P13-201ENST00000493291 347 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 RNU6-612P-201ENST00000516909 102 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
DDX4Q9NQI0 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.66□□□□□ -1.98
DDX4Q9NQI0 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
DDX4Q9NQI0 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.66□□□□□ -1.98
DDX4Q9NQI0 RPS15AP11-201ENST00000594193 385 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 AC019193.3-201ENST00000609144 554 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
DDX4Q9NQI0 AL359198.2-201ENST00000611836 194 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 MIR6128-201ENST00000615528 109 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 AC002543.1-201ENST00000299783 1954 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.66□□□□□ -1.98
DDX4Q9NQI0 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.66□□□□□ -1.98
DDX4Q9NQI0 AL109809.4-201ENST00000603520 2185 ntBASIC2.66□□□□□ -1.98
DDX4Q9NQI0 RNU6-227P-201ENST00000362865 103 ntBASIC2.65□□□□□ -1.99
DDX4Q9NQI0 RNU6-797P-201ENST00000363101 109 ntBASIC2.65□□□□□ -1.99
DDX4Q9NQI0 RNU6-1317P-201ENST00000364582 104 ntBASIC2.65□□□□□ -1.99
DDX4Q9NQI0 U8.8-201ENST00000365399 135 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms