Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 AC087854.1-201ENST00000519706 414 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 COX6CP5-201ENST00000527162 228 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 MIR4782-201ENST00000577987 79 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 AC011494.1-201ENST00000596454 237 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 AL355598.1-201ENST00000604169 202 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 AC087045.1-201ENST00000605856 382 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 AC004852.3-201ENST00000614131 326 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 CDC27P3-201ENST00000635418 1910 ntBASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 AC005336.3-201ENST00000623833 2679 ntBASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 RNU6-1329P-201ENST00000365664 107 ntBASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 CYCSP49-201ENST00000420810 319 ntBASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 AL365496.1-201ENST00000426885 215 ntBASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 AL445687.1-201ENST00000439946 251 ntBASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 AC093019.1-201ENST00000443135 252 ntBASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 HMGB3P3-201ENST00000510526 400 ntBASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 AC104576.1-201ENST00000524225 88 ntBASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 LINC00933-203ENST00000559812 219 ntBASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 MYL12BP1-201ENST00000569826 507 ntBASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 AL022345.1-201ENST00000607292 135 ntBASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 AC011890.2-201ENST00000613393 294 ntBASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 AC099654.5-201ENST00000636479 350 ntBASIC2.34□□□□□ -2.03
UPF3AQ9H1J1 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
UPF3AQ9H1J1 AC110491.1-201ENST00000562191 2010 ntBASIC2.34□□□□□ -2.04
UPF3AQ9H1J1 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.04
UPF3AQ9H1J1 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 Y_RNA.58-201ENST00000362807 102 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 Y_RNA.154-201ENST00000363624 102 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 RNY3P1-201ENST00000365085 102 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 RNY3-201ENST00000365484 102 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 Y_RNA.490-201ENST00000384413 102 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 AL117339.3-201ENST00000418733 162 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 RPL31P41-201ENST00000477967 372 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 Y_RNA.676-201ENST00000516393 96 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 RNA5SP82-201ENST00000516707 92 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 AC021739.1-201ENST00000559631 174 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 AL355375.2-201ENST00000574825 175 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 AC100830.2-201ENST00000581636 240 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 MIR4795-201ENST00000584182 89 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 AC243960.4-201ENST00000600532 288 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 AL121917.1-203ENST00000605534 577 ntBASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
UPF3AQ9H1J1 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 RNU6-562P-201ENST00000362731 107 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 RNU6-78P-201ENST00000362897 107 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 RAP1BP3-201ENST00000407180 549 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 U3.37-201ENST00000408528 213 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 RN7SKP158-201ENST00000410453 326 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 AL139156.1-201ENST00000412785 841 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 AC011753.1-201ENST00000451001 220 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 AC013470.1-201ENST00000453438 462 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 RNU7-187P-201ENST00000458985 68 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 RNU7-23P-201ENST00000459465 62 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 RPL39P5-202ENST00000512505 151 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 RNU6-581P-201ENST00000516214 105 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 AC006199.1-201ENST00000548728 219 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 MIR4790-201ENST00000577799 79 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 MIR3117-201ENST00000584034 78 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 MIR4658-201ENST00000584344 65 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 160.5 ms