Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 uc_338.17-201ENST00000619633 179 ntBASIC0.42□□□□□ -2.34
USP54Q70EL1 MTND5P42-201ENST00000637720 498 ntBASIC0.42□□□□□ -2.34
USP54Q70EL1 AL159152.1-201ENST00000635019 2587 ntBASIC0.41□□□□□ -2.34
USP54Q70EL1 MIR1912-201ENST00000410389 80 ntBASIC0.41□□□□□ -2.34
USP54Q70EL1 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.41□□□□□ -2.34
USP54Q70EL1 MTCO3P43-201ENST00000440974 771 ntBASIC0.41□□□□□ -2.34
USP54Q70EL1 MTND2P30-201ENST00000456663 382 ntBASIC0.41□□□□□ -2.34
USP54Q70EL1 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC0.41□□□□□ -2.34
USP54Q70EL1 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.41□□□□□ -2.34
USP54Q70EL1 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC0.41□□□□□ -2.34
USP54Q70EL1 SUMO2P16-201ENST00000519475 264 ntBASIC0.41□□□□□ -2.34
USP54Q70EL1 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC0.41□□□□□ -2.34
USP54Q70EL1 AL132657.2-201ENST00000564417 358 ntBASIC0.41□□□□□ -2.34
USP54Q70EL1 AC025678.1-201ENST00000567861 338 ntBASIC0.41□□□□□ -2.34
USP54Q70EL1 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC0.41□□□□□ -2.34
USP54Q70EL1 AL353778.1-201ENST00000603149 408 ntBASIC0.41□□□□□ -2.34
USP54Q70EL1 AC098483.2-201ENST00000603158 454 ntBASIC0.41□□□□□ -2.34
USP54Q70EL1 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.41□□□□□ -2.34
USP54Q70EL1 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.41□□□□□ -2.34
USP54Q70EL1 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.4□□□□□ -2.34
USP54Q70EL1 MIR320C1-201ENST00000408566 88 ntBASIC0.4□□□□□ -2.34
USP54Q70EL1 COX6CP10-201ENST00000416832 224 ntBASIC0.4□□□□□ -2.34
USP54Q70EL1 AL355994.1-201ENST00000424379 260 ntBASIC0.4□□□□□ -2.34
USP54Q70EL1 NDUFB1P2-201ENST00000449477 176 ntBASIC0.4□□□□□ -2.34
USP54Q70EL1 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.4□□□□□ -2.34
USP54Q70EL1 AL139824.2-201ENST00000458731 1095 ntBASIC0.4□□□□□ -2.34
USP54Q70EL1 RNU6-150P-201ENST00000516237 95 ntBASIC0.4□□□□□ -2.34
USP54Q70EL1 Y_RNA.689-201ENST00000516589 107 ntBASIC0.4□□□□□ -2.34
USP54Q70EL1 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.4□□□□□ -2.34
USP54Q70EL1 AC008088.1-201ENST00000580993 280 ntBASIC0.4□□□□□ -2.34
USP54Q70EL1 BNIP3P16-201ENST00000589779 534 ntBASIC0.4□□□□□ -2.34
USP54Q70EL1 AC022432.1-201ENST00000595739 310 ntBASIC0.4□□□□□ -2.34
USP54Q70EL1 RNU6-395P-201ENST00000365662 106 ntBASIC0.4□□□□□ -2.35
USP54Q70EL1 Y_RNA.408-201ENST00000383987 102 ntBASIC0.4□□□□□ -2.35
USP54Q70EL1 RNU6-110P-201ENST00000384508 104 ntBASIC0.4□□□□□ -2.35
USP54Q70EL1 AL031577.2-201ENST00000404133 280 ntBASIC0.4□□□□□ -2.35
USP54Q70EL1 ARL5AP1-201ENST00000418991 388 ntBASIC0.4□□□□□ -2.35
USP54Q70EL1 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.4□□□□□ -2.35
USP54Q70EL1 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.4□□□□□ -2.35
USP54Q70EL1 AC074344.1-201ENST00000512823 224 ntBASIC0.4□□□□□ -2.35
USP54Q70EL1 AC027338.1-201ENST00000514840 825 ntBASIC0.4□□□□□ -2.35
USP54Q70EL1 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC0.4□□□□□ -2.35
USP54Q70EL1 AC022784.5-201ENST00000522241 437 ntBASIC0.4□□□□□ -2.35
USP54Q70EL1 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.4□□□□□ -2.35
USP54Q70EL1 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC0.4□□□□□ -2.35
USP54Q70EL1 AL442163.3-201ENST00000554110 156 ntBASIC0.4□□□□□ -2.35
USP54Q70EL1 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC0.4□□□□□ -2.35
USP54Q70EL1 AC012557.2-201ENST00000605919 418 ntBASIC0.4□□□□□ -2.35
USP54Q70EL1 MIR15A-201ENST00000607334 83 ntBASIC0.4□□□□□ -2.35
USP54Q70EL1 AC130324.3-201ENST00000614165 542 ntBASIC0.4□□□□□ -2.35
USP54Q70EL1 FRG1KP-201ENST00000623592 341 ntBASIC0.4□□□□□ -2.35
USP54Q70EL1 AC093875.1-201ENST00000623688 504 ntBASIC0.4□□□□□ -2.35
USP54Q70EL1 MIR412-201ENST00000362142 91 ntBASIC0.39□□□□□ -2.35
USP54Q70EL1 SNORA63D-201ENST00000364359 132 ntBASIC0.39□□□□□ -2.35
USP54Q70EL1 RNU6-910P-201ENST00000390844 107 ntBASIC0.39□□□□□ -2.35
USP54Q70EL1 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC0.39□□□□□ -2.35
USP54Q70EL1 MTND1P30-201ENST00000441241 901 ntBASIC0.39□□□□□ -2.35
USP54Q70EL1 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.39□□□□□ -2.35
USP54Q70EL1 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.39□□□□□ -2.35
USP54Q70EL1 AC105758.1-201ENST00000506038 399 ntBASIC0.39□□□□□ -2.35
USP54Q70EL1 AC015688.6-201ENST00000577737 104 ntBASIC0.39□□□□□ -2.35
USP54Q70EL1 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC0.39□□□□□ -2.35
USP54Q70EL1 AC069114.2-201ENST00000604699 304 ntBASIC0.39□□□□□ -2.35
USP54Q70EL1 RNU6-72P-201ENST00000384285 79 ntBASIC0.38□□□□□ -2.35
USP54Q70EL1 Y_RNA.534-201ENST00000384599 112 ntBASIC0.38□□□□□ -2.35
USP54Q70EL1 RNU4-22P-201ENST00000411058 166 ntBASIC0.38□□□□□ -2.35
USP54Q70EL1 MTCO3P29-201ENST00000432119 779 ntBASIC0.38□□□□□ -2.35
USP54Q70EL1 AC069257.2-201ENST00000441819 155 ntBASIC0.38□□□□□ -2.35
USP54Q70EL1 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.38□□□□□ -2.35
USP54Q70EL1 RPL31P3-201ENST00000458430 332 ntBASIC0.38□□□□□ -2.35
USP54Q70EL1 RPS27P22-201ENST00000478056 241 ntBASIC0.38□□□□□ -2.35
USP54Q70EL1 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.38□□□□□ -2.35
USP54Q70EL1 AL590705.4-201ENST00000532209 134 ntBASIC0.38□□□□□ -2.35
USP54Q70EL1 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.38□□□□□ -2.35
USP54Q70EL1 AL391001.1-201ENST00000602747 715 ntBASIC0.38□□□□□ -2.35
USP54Q70EL1 AC018889.1-201ENST00000605372 397 ntBASIC0.38□□□□□ -2.35
USP54Q70EL1 AC090186.1-201ENST00000605991 572 ntBASIC0.38□□□□□ -2.35
USP54Q70EL1 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.38□□□□□ -2.35
USP54Q70EL1 AC104985.3-201ENST00000623479 597 ntBASIC0.38□□□□□ -2.35
USP54Q70EL1 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 Y_RNA.33-201ENST00000362591 102 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 snoZ40.1-201ENST00000364540 72 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC0.37□□□□□ -2.35
USP54Q70EL1 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.37□□□□□ -2.35
USP54Q70EL1 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.37□□□□□ -2.35
USP54Q70EL1 RNA5SP285-201ENST00000516619 119 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 APOOP3-201ENST00000536787 586 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 AC018659.1-201ENST00000551083 169 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 AL136520.1-202ENST00000555494 763 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 AL136363.2-201ENST00000604173 851 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 MIR3976-201ENST00000606807 139 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 RNU6-853P-201ENST00000364306 107 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 SMIM11P1-201ENST00000369586 178 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 MIR544A-201ENST00000384855 91 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 RNU6-817P-201ENST00000391083 104 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.37□□□□□ -2.35
USP54Q70EL1 AL122001.1-201ENST00000457027 370 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 MTND3P5-201ENST00000512798 333 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 RNU4-54P-201ENST00000516428 129 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 RNA5SP168-201ENST00000516642 112 ntBASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms