Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 Y_RNA.721-201ENST00000517207 102 ntBASIC2.96□□□□□ -1.94
PTCHD3Q3KNS1 AP002404.1-201ENST00000532005 451 ntBASIC2.96□□□□□ -1.94
PTCHD3Q3KNS1 EIF4BP1-201ENST00000554881 351 ntBASIC2.96□□□□□ -1.94
PTCHD3Q3KNS1 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.96□□□□□ -1.94
PTCHD3Q3KNS1 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.96□□□□□ -1.94
PTCHD3Q3KNS1 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.96□□□□□ -1.94
PTCHD3Q3KNS1 RPL23AP78-201ENST00000599928 470 ntBASIC2.96□□□□□ -1.94
PTCHD3Q3KNS1 AL137843.1-201ENST00000605078 385 ntBASIC2.96□□□□□ -1.94
PTCHD3Q3KNS1 AC004832.5-201ENST00000608677 401 ntBASIC2.96□□□□□ -1.94
PTCHD3Q3KNS1 AC243829.7-201ENST00000633081 225 ntBASIC2.96□□□□□ -1.94
PTCHD3Q3KNS1 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
PTCHD3Q3KNS1 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.96□□□□□ -1.94
PTCHD3Q3KNS1 AC005592.1-201ENST00000566527 1640 ntBASIC2.96□□□□□ -1.94
PTCHD3Q3KNS1 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
PTCHD3Q3KNS1 AL109809.4-201ENST00000603520 2185 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AC073325.2-201ENST00000339545 159 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 RNU4-42P-201ENST00000364738 142 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 Y_RNA.405-201ENST00000383979 100 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 RNU6-1027P-201ENST00000383998 107 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 Y_RNA.451-201ENST00000384200 100 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 Y_RNA.504-201ENST00000384481 104 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 Y_RNA.524-201ENST00000384564 100 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 Y_RNA.561-201ENST00000384694 100 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AL512633.1-201ENST00000399931 655 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 RNU6-985P-201ENST00000410182 104 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 RNA5SP274-201ENST00000410484 108 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AL160004.2-201ENST00000432935 350 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 GPM6BP3-201ENST00000442797 145 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AC093852.1-201ENST00000503587 266 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 Y_RNA.706-201ENST00000516933 99 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AC079598.5-201ENST00000547460 117 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 MIR4680-201ENST00000580906 66 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AC016727.2-201ENST00000603988 621 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AC087588.2-201ENST00000617667 426 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AC138305.3-201ENST00000624988 240 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 MIR4272-201ENST00000635924 64 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AL450472.1-202ENST00000637286 180 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 AC008264.2-201ENST00000610193 3731 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 FAM35CP-201ENST00000554755 2470 ntBASIC2.95□□□□□ -1.94
PTCHD3Q3KNS1 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 MIR22-201ENST00000362190 85 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 SNORA54-201ENST00000384281 123 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 SNORA69.1-201ENST00000390904 137 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 U3.26-201ENST00000391236 204 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 AC138623.1-201ENST00000418060 216 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 COTL1P1-201ENST00000422309 375 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 AC092423.1-201ENST00000430165 186 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 AC009296.1-201ENST00000443146 155 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 AC112492.4-201ENST00000456549 352 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 AP001324.2-201ENST00000461163 319 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 AIG1P1-201ENST00000503376 148 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 RNU6-567P-201ENST00000516746 107 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 AC091144.1-201ENST00000519573 138 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 LARP7P3-201ENST00000579888 337 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 MIR3136-201ENST00000583498 78 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 AC010928.2-201ENST00000588017 287 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 VN1R91P-201ENST00000594377 169 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 AL162730.1-201ENST00000605734 292 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 SNORD58B-201ENST00000607313 66 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 AC007318.2-201ENST00000620999 243 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 MTND4P1-201ENST00000457501 1466 ntBASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.94□□□□□ -1.94
PTCHD3Q3KNS1 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
PTCHD3Q3KNS1 AC099654.7-201ENST00000635788 2127 ntBASIC2.93□□□□□ -1.94
PTCHD3Q3KNS1 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
PTCHD3Q3KNS1 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
PTCHD3Q3KNS1 RNU6-137P-201ENST00000363680 108 ntBASIC2.93□□□□□ -1.94
PTCHD3Q3KNS1 CD24P4-201ENST00000382840 243 ntBASIC2.93□□□□□ -1.94
PTCHD3Q3KNS1 RNU6-17P-201ENST00000384245 107 ntBASIC2.93□□□□□ -1.94
PTCHD3Q3KNS1 RNU6-18P-201ENST00000384527 107 ntBASIC2.93□□□□□ -1.94
PTCHD3Q3KNS1 SNORA44-201ENST00000384584 132 ntBASIC2.93□□□□□ -1.94
PTCHD3Q3KNS1 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
PTCHD3Q3KNS1 RN7SL633P-201ENST00000488974 297 ntBASIC2.93□□□□□ -1.94
PTCHD3Q3KNS1 RPL22P13-201ENST00000493291 347 ntBASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 200.9 ms