Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC025253.1-201ENST00000613623 543 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
COL28A1Q2UY09 Y_RNA.184-201ENST00000363884 108 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 RNU6-593P-201ENST00000364716 112 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 RNU6-933P-201ENST00000384424 107 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 FO393413.1-201ENST00000402892 195 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 RN7SKP158-201ENST00000410453 326 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 RN7SKP223-201ENST00000410582 62 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 RNA5SP21-201ENST00000410917 96 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 AL135786.1-201ENST00000415892 214 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.58□□□□□ -2
COL28A1Q2UY09 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC2.58□□□□□ -2
COL28A1Q2UY09 AIMP1P2-201ENST00000425294 312 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 AL133396.1-201ENST00000432048 687 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.58□□□□□ -2
COL28A1Q2UY09 RPL30P12-201ENST00000474666 353 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 AL121594.1-201ENST00000475906 575 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 RPL23AP70-201ENST00000483361 460 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 AC022447.4-201ENST00000504053 364 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 AC023141.11-201ENST00000508864 202 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 PTP4A1P4-201ENST00000512479 322 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 Y_RNA.702-201ENST00000516843 96 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 RNU6-273P-201ENST00000516937 96 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.58□□□□□ -2
COL28A1Q2UY09 AC016256.1-201ENST00000547971 354 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.58□□□□□ -2
COL28A1Q2UY09 MIR3117-201ENST00000584034 78 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.58□□□□□ -2
COL28A1Q2UY09 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.58□□□□□ -2
COL28A1Q2UY09 AC018889.1-201ENST00000605372 397 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 AC090115.4-201ENST00000609970 188 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 AL161423.1-201ENST00000613700 262 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 AL008636.1-201ENST00000625038 1018 ntBASIC2.58□□□□□ -2
COL28A1Q2UY09 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
COL28A1Q2UY09 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL28A1Q2UY09 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.57□□□□□ -2
COL28A1Q2UY09 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.57□□□□□ -2
COL28A1Q2UY09 AC092593.1-201ENST00000515413 1815 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
COL28A1Q2UY09 RNU6-655P-201ENST00000362858 107 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 RNU1-72P-201ENST00000362976 153 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 RNU6-1210P-201ENST00000363775 107 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 RNU6-1180P-201ENST00000364935 107 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 MIR181A2-201ENST00000384863 110 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 SNORA26.3-201ENST00000391119 136 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 BTF3L4P2-201ENST00000392798 346 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 CBX3P9-201ENST00000402326 552 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 AL356432.1-201ENST00000405809 419 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 RNU2-25P-201ENST00000411041 191 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.57□□□□□ -2
COL28A1Q2UY09 AC074085.1-201ENST00000413598 418 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 AC008267.5-201ENST00000424928 265 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.57□□□□□ -2
COL28A1Q2UY09 USP9YP8-201ENST00000441913 500 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 PCMTD1P1-201ENST00000455560 355 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.57□□□□□ -2
COL28A1Q2UY09 RPL30P1-201ENST00000488676 339 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 AC103851.1-201ENST00000506833 274 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 RPL39P5-202ENST00000512505 151 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 RN7SKP40-201ENST00000517211 242 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL28A1Q2UY09 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.57□□□□□ -2
COL28A1Q2UY09 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 AC090616.3-201ENST00000582184 217 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.57□□□□□ -2
COL28A1Q2UY09 AC124303.1-201ENST00000605703 360 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 RPL23AP88-201ENST00000605759 454 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 AL449363.1-201ENST00000617815 186 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 TPTEP1-208ENST00000636884 213 ntBASIC2.57□□□□□ -2
COL28A1Q2UY09 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
COL28A1Q2UY09 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.56□□□□□ -2
COL28A1Q2UY09 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
COL28A1Q2UY09 AC092268.1-201ENST00000342691 405 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 Y_RNA.142-201ENST00000363491 102 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 SNORA25.6-201ENST00000364121 118 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 RNU6-596P-201ENST00000365395 98 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 MIR517A-201ENST00000385001 87 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 RNU6-220P-201ENST00000390919 107 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 HMGN2P35-201ENST00000412164 270 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.56□□□□□ -2
COL28A1Q2UY09 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.56□□□□□ -2
COL28A1Q2UY09 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.56□□□□□ -2
COL28A1Q2UY09 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.56□□□□□ -2
COL28A1Q2UY09 AL445687.1-201ENST00000439946 251 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.56□□□□□ -2
COL28A1Q2UY09 MRPL50P4-201ENST00000446432 475 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.56□□□□□ -2
COL28A1Q2UY09 AC107399.1-201ENST00000451226 265 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.56□□□□□ -2
COL28A1Q2UY09 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.56□□□□□ -2
COL28A1Q2UY09 AC091951.2-201ENST00000500762 203 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 RNU2-53P-201ENST00000516257 147 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 RNU6-875P-201ENST00000516488 106 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.56□□□□□ -2
COL28A1Q2UY09 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.56□□□□□ -2
COL28A1Q2UY09 IMMP1LP2-201ENST00000552954 492 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.56□□□□□ -2
COL28A1Q2UY09 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms