Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC0.52□□□□□ -2.33
CHD3Q12873 NDUFB1P2-201ENST00000449477 176 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 AC003071.1-201ENST00000451219 789 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 snoU13.30-201ENST00000458951 104 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 AC119751.4-201ENST00000507498 357 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.52□□□□□ -2.33
CHD3Q12873 RNVU1-2-201ENST00000516326 135 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 SNORA62.5-201ENST00000516634 120 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 MTND1P36-201ENST00000522384 936 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 AC021231.3-201ENST00000558497 370 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.52□□□□□ -2.33
CHD3Q12873 AC012507.3-201ENST00000603556 477 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 AL021879.1-201ENST00000611756 288 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC0.52□□□□□ -2.33
CHD3Q12873 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.52□□□□□ -2.33
CHD3Q12873 AC023158.2-201ENST00000614876 543 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 RNU6-1274P-201ENST00000384557 107 ntBASIC0.51□□□□□ -2.33
CHD3Q12873 RPL23AP32-201ENST00000395315 459 ntBASIC0.51□□□□□ -2.33
CHD3Q12873 AL133475.1-201ENST00000404414 305 ntBASIC0.51□□□□□ -2.33
CHD3Q12873 MTND4P20-201ENST00000424125 869 ntBASIC0.51□□□□□ -2.33
CHD3Q12873 RAB28P5-201ENST00000427490 651 ntBASIC0.51□□□□□ -2.33
CHD3Q12873 LARP1BP3-201ENST00000437229 869 ntBASIC0.51□□□□□ -2.33
CHD3Q12873 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.51□□□□□ -2.33
CHD3Q12873 snoU109.2-201ENST00000459316 135 ntBASIC0.51□□□□□ -2.33
CHD3Q12873 RPL39P36-201ENST00000490784 156 ntBASIC0.51□□□□□ -2.33
CHD3Q12873 HSPE1P23-201ENST00000509838 286 ntBASIC0.51□□□□□ -2.33
CHD3Q12873 RNU6-322P-201ENST00000516010 103 ntBASIC0.51□□□□□ -2.33
CHD3Q12873 AL356057.1-201ENST00000533798 831 ntBASIC0.51□□□□□ -2.33
CHD3Q12873 AL391001.1-201ENST00000602747 715 ntBASIC0.51□□□□□ -2.33
CHD3Q12873 U6.42-201ENST00000618440 107 ntBASIC0.51□□□□□ -2.33
CHD3Q12873 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
CHD3Q12873 Y_RNA.280-201ENST00000364765 112 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.5□□□□□ -2.33
CHD3Q12873 Y_RNA.412-201ENST00000384001 104 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 RNU6-142P-201ENST00000384019 107 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 RPS3AP36-201ENST00000398190 775 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 VPS26BP1-201ENST00000417155 755 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC0.5□□□□□ -2.33
CHD3Q12873 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC0.5□□□□□ -2.33
CHD3Q12873 AC006366.1-201ENST00000422002 759 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 MTCO2P1-201ENST00000424648 477 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 AC000111.3-201ENST00000433478 193 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 AC027119.1-201ENST00000440877 241 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 HSPE1P13-201ENST00000451143 297 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 ZNF736P5Y-201ENST00000451173 805 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.5□□□□□ -2.33
CHD3Q12873 PSMC1P5-201ENST00000512850 177 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC0.5□□□□□ -2.33
CHD3Q12873 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.5□□□□□ -2.33
CHD3Q12873 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC0.5□□□□□ -2.33
CHD3Q12873 AC092325.1-201ENST00000566449 554 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 MIR3146-201ENST00000580367 79 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC0.5□□□□□ -2.33
CHD3Q12873 AL590229.1-201ENST00000603497 542 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 DPPA3P3-201ENST00000603842 430 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 AC018889.1-201ENST00000605372 397 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 AL022345.2-201ENST00000606307 135 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 AP002782.1-201ENST00000623107 614 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 MIR6086-201ENST00000638065 55 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 RNU6-1285P-201ENST00000363480 105 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 RNU6-817P-201ENST00000391083 104 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 RNU1-119P-201ENST00000391122 165 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 AC245047.7-201ENST00000440265 293 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 AC243964.1-201ENST00000441814 261 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 PGBD4P5-201ENST00000445958 426 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC0.5□□□□□ -2.33
CHD3Q12873 AC011005.2-201ENST00000487324 359 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 AC112206.3-201ENST00000514578 389 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 RNU6-1092P-201ENST00000516955 87 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 SNORA77B-201ENST00000578179 125 ntBASIC0.5□□□□□ -2.33
CHD3Q12873 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
CHD3Q12873 Y_RNA.471-201ENST00000384312 102 ntBASIC0.49□□□□□ -2.33
CHD3Q12873 MIR520A-201ENST00000384862 85 ntBASIC0.49□□□□□ -2.33
CHD3Q12873 RNA5SP63-201ENST00000391225 112 ntBASIC0.49□□□□□ -2.33
CHD3Q12873 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.49□□□□□ -2.33
CHD3Q12873 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.49□□□□□ -2.33
CHD3Q12873 AC007327.1-201ENST00000447461 264 ntBASIC0.49□□□□□ -2.33
CHD3Q12873 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.49□□□□□ -2.33
CHD3Q12873 RNU6-496P-201ENST00000516145 99 ntBASIC0.49□□□□□ -2.33
CHD3Q12873 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.49□□□□□ -2.33
CHD3Q12873 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.49□□□□□ -2.33
CHD3Q12873 ADI1P3-201ENST00000549509 470 ntBASIC0.49□□□□□ -2.33
CHD3Q12873 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC0.49□□□□□ -2.33
CHD3Q12873 AC137800.2-201ENST00000574375 120 ntBASIC0.49□□□□□ -2.33
CHD3Q12873 AC004492.1-201ENST00000607036 742 ntBASIC0.49□□□□□ -2.33
CHD3Q12873 AC008147.4-201ENST00000617570 1204 ntBASIC0.49□□□□□ -2.33
CHD3Q12873 Y_RNA.192-201ENST00000363977 102 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 VTRNA1-3-201ENST00000365645 89 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 RNU6-968P-201ENST00000384076 107 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 RNU6-35P-201ENST00000384530 107 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 MTCO3P41-201ENST00000414801 328 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 RPS3AP37-201ENST00000419176 745 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.48□□□□□ -2.33
CHD3Q12873 RNU1-131P-201ENST00000458943 161 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 SNORA3.4-201ENST00000515969 96 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 RNU6-914P-201ENST00000516749 109 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.48□□□□□ -2.33
CHD3Q12873 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.48□□□□□ -2.33
CHD3Q12873 TMF1P1-201ENST00000576058 373 ntBASIC0.48□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms