Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC1.54□□□□□ -2.16
RFX3P48380 CYP2C61P-201ENST00000604072 290 ntBASIC1.54□□□□□ -2.16
RFX3P48380 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
RFX3P48380 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
RFX3P48380 MTND4P14-201ENST00000435799 1354 ntBASIC1.54□□□□□ -2.16
RFX3P48380 AC006026.1-201ENST00000444025 1803 ntBASIC1.54□□□□□ -2.16
RFX3P48380 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
RFX3P48380 Y_RNA.99-201ENST00000363138 105 ntBASIC1.53□□□□□ -2.16
RFX3P48380 RNA5SP99-201ENST00000364020 114 ntBASIC1.53□□□□□ -2.16
RFX3P48380 RNU6-1141P-201ENST00000364520 107 ntBASIC1.53□□□□□ -2.16
RFX3P48380 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
RFX3P48380 RPS29P13-201ENST00000402041 169 ntBASIC1.53□□□□□ -2.16
RFX3P48380 AL033519.2-201ENST00000403958 392 ntBASIC1.53□□□□□ -2.16
RFX3P48380 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.53□□□□□ -2.16
RFX3P48380 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.53□□□□□ -2.16
RFX3P48380 ZNF680P1-201ENST00000436625 1469 ntBASIC1.53□□□□□ -2.16
RFX3P48380 AL031667.1-201ENST00000440222 725 ntBASIC1.53□□□□□ -2.16
RFX3P48380 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.53□□□□□ -2.16
RFX3P48380 AL360221.1-201ENST00000445989 335 ntBASIC1.53□□□□□ -2.16
RFX3P48380 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.53□□□□□ -2.16
RFX3P48380 SCARNA18-201ENST00000459004 134 ntBASIC1.53□□□□□ -2.16
RFX3P48380 AC087884.1-201ENST00000469738 328 ntBASIC1.53□□□□□ -2.16
RFX3P48380 AC132942.1-201ENST00000486753 483 ntBASIC1.53□□□□□ -2.16
RFX3P48380 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.53□□□□□ -2.16
RFX3P48380 Y_RNA.695-201ENST00000516715 107 ntBASIC1.53□□□□□ -2.16
RFX3P48380 SNORA25.17-201ENST00000517184 124 ntBASIC1.53□□□□□ -2.16
RFX3P48380 AC069113.1-201ENST00000517763 267 ntBASIC1.53□□□□□ -2.16
RFX3P48380 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.53□□□□□ -2.16
RFX3P48380 OSBPL9P5-201ENST00000542581 171 ntBASIC1.53□□□□□ -2.16
RFX3P48380 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
RFX3P48380 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.53□□□□□ -2.16
RFX3P48380 RSL24D1P11-201ENST00000591045 491 ntBASIC1.53□□□□□ -2.16
RFX3P48380 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.53□□□□□ -2.16
RFX3P48380 AC025449.1-201ENST00000603896 529 ntBASIC1.53□□□□□ -2.16
RFX3P48380 AC104073.3-201ENST00000610942 955 ntBASIC1.53□□□□□ -2.16
RFX3P48380 AL158063.1-201ENST00000615349 536 ntBASIC1.53□□□□□ -2.16
RFX3P48380 RNU6-1303P-201ENST00000364841 107 ntBASIC1.52□□□□□ -2.17
RFX3P48380 RNU6-142P-201ENST00000384019 107 ntBASIC1.52□□□□□ -2.17
RFX3P48380 RNU5A-6P-201ENST00000384136 116 ntBASIC1.52□□□□□ -2.17
RFX3P48380 RNU6-517P-201ENST00000384362 110 ntBASIC1.52□□□□□ -2.17
RFX3P48380 SNORA48.1-201ENST00000390879 135 ntBASIC1.52□□□□□ -2.17
RFX3P48380 SNORA16.2-201ENST00000390991 127 ntBASIC1.52□□□□□ -2.17
RFX3P48380 RNA5SP100-201ENST00000410903 110 ntBASIC1.52□□□□□ -2.17
RFX3P48380 RNA5SP59-201ENST00000410922 110 ntBASIC1.52□□□□□ -2.17
RFX3P48380 RNU6-293P-201ENST00000411259 106 ntBASIC1.52□□□□□ -2.17
RFX3P48380 RN7SKP101-201ENST00000411376 320 ntBASIC1.52□□□□□ -2.17
RFX3P48380 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.52□□□□□ -2.17
RFX3P48380 CYCSP49-201ENST00000420810 319 ntBASIC1.52□□□□□ -2.17
RFX3P48380 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.52□□□□□ -2.17
RFX3P48380 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC1.52□□□□□ -2.17
RFX3P48380 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.52□□□□□ -2.17
RFX3P48380 SNRPFP3-201ENST00000457792 225 ntBASIC1.52□□□□□ -2.17
RFX3P48380 RNU6-333P-201ENST00000459117 107 ntBASIC1.52□□□□□ -2.17
RFX3P48380 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.52□□□□□ -2.17
RFX3P48380 AC008834.1-201ENST00000511612 175 ntBASIC1.52□□□□□ -2.17
RFX3P48380 MTND3P5-201ENST00000512798 333 ntBASIC1.52□□□□□ -2.17
RFX3P48380 MIR449C-201ENST00000516047 92 ntBASIC1.52□□□□□ -2.17
RFX3P48380 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.52□□□□□ -2.17
RFX3P48380 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.52□□□□□ -2.17
RFX3P48380 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.52□□□□□ -2.17
RFX3P48380 AP005435.4-201ENST00000529514 284 ntBASIC1.52□□□□□ -2.17
RFX3P48380 AL137161.1-201ENST00000532231 390 ntBASIC1.52□□□□□ -2.17
RFX3P48380 MIR4528-201ENST00000577763 90 ntBASIC1.52□□□□□ -2.17
RFX3P48380 MIR4285-201ENST00000581001 85 ntBASIC1.52□□□□□ -2.17
RFX3P48380 AP000942.3-201ENST00000603702 160 ntBASIC1.52□□□□□ -2.17
RFX3P48380 AC010900.2-201ENST00000604508 210 ntBASIC1.52□□□□□ -2.17
RFX3P48380 AC008536.2-201ENST00000607284 349 ntBASIC1.52□□□□□ -2.17
RFX3P48380 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.52□□□□□ -2.17
RFX3P48380 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
RFX3P48380 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.52□□□□□ -2.17
RFX3P48380 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.52□□□□□ -2.17
RFX3P48380 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.52□□□□□ -2.17
RFX3P48380 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.51□□□□□ -2.17
RFX3P48380 MIR126-201ENST00000362291 85 ntBASIC1.51□□□□□ -2.17
RFX3P48380 RNA5SP493-201ENST00000364115 91 ntBASIC1.51□□□□□ -2.17
RFX3P48380 SNORD114-6-201ENST00000364393 72 ntBASIC1.51□□□□□ -2.17
RFX3P48380 RNU6-348P-201ENST00000384386 107 ntBASIC1.51□□□□□ -2.17
RFX3P48380 RNU6-903P-201ENST00000391270 109 ntBASIC1.51□□□□□ -2.17
RFX3P48380 RNU2-9P-201ENST00000410194 145 ntBASIC1.51□□□□□ -2.17
RFX3P48380 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.51□□□□□ -2.17
RFX3P48380 AC078809.1-201ENST00000427601 140 ntBASIC1.51□□□□□ -2.17
RFX3P48380 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC1.51□□□□□ -2.17
RFX3P48380 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.51□□□□□ -2.17
RFX3P48380 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
RFX3P48380 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.51□□□□□ -2.17
RFX3P48380 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.51□□□□□ -2.17
RFX3P48380 MIR3169-201ENST00000578032 83 ntBASIC1.51□□□□□ -2.17
RFX3P48380 Z99497.2-201ENST00000603634 310 ntBASIC1.51□□□□□ -2.17
RFX3P48380 AL034555.1-201ENST00000604816 211 ntBASIC1.51□□□□□ -2.17
RFX3P48380 AC016925.2-201ENST00000605108 242 ntBASIC1.51□□□□□ -2.17
RFX3P48380 AP000654.2-201ENST00000605633 586 ntBASIC1.51□□□□□ -2.17
RFX3P48380 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
RFX3P48380 AC233981.2-201ENST00000611524 1614 ntBASIC1.51□□□□□ -2.17
RFX3P48380 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.51□□□□□ -2.17
RFX3P48380 RNU4-15P-201ENST00000362613 141 ntBASIC1.5□□□□□ -2.17
RFX3P48380 RNU1-17P-201ENST00000363022 152 ntBASIC1.5□□□□□ -2.17
RFX3P48380 RNU6-23P-201ENST00000363283 107 ntBASIC1.5□□□□□ -2.17
RFX3P48380 RNU4-56P-201ENST00000364700 142 ntBASIC1.5□□□□□ -2.17
RFX3P48380 RNU6-336P-201ENST00000364891 107 ntBASIC1.5□□□□□ -2.17
RFX3P48380 RNU6-1103P-201ENST00000384150 107 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms