Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL049830.1-201ENST00000468034 425 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC-0.18□□□□□ -2.44
CUX1P39880 BNIP3P6-201ENST00000549284 499 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC-0.18□□□□□ -2.44
CUX1P39880 AC100810.6-201ENST00000638068 285 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 SNORA32.1-201ENST00000364514 115 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 RNU6-898P-201ENST00000365627 104 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 Y_RNA.453-201ENST00000384223 109 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 RNU6-1067P-201ENST00000384752 107 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC-0.18□□□□□ -2.44
CUX1P39880 Y_RNA.597-201ENST00000410463 100 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC-0.18□□□□□ -2.44
CUX1P39880 DAP3P1-201ENST00000441522 278 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 AC073910.1-201ENST00000445047 438 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC-0.18□□□□□ -2.44
CUX1P39880 HMGB1P30-201ENST00000492455 606 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 MTND1P22-201ENST00000510572 951 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 SUMO2P18-201ENST00000518873 252 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC-0.18□□□□□ -2.44
CUX1P39880 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC-0.18□□□□□ -2.44
CUX1P39880 MIR4290-201ENST00000583807 95 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC-0.18□□□□□ -2.44
CUX1P39880 AL078595.3-201ENST00000623815 1166 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 AC019226.1-201ENST00000625666 515 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 RNU6-46P-201ENST00000383860 107 ntBASIC-0.19□□□□□ -2.44
CUX1P39880 RNU6-637P-201ENST00000384050 107 ntBASIC-0.19□□□□□ -2.44
CUX1P39880 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC-0.19□□□□□ -2.44
CUX1P39880 AC244098.3-201ENST00000424803 96 ntBASIC-0.19□□□□□ -2.44
CUX1P39880 SNORD57-201ENST00000448188 72 ntBASIC-0.19□□□□□ -2.44
CUX1P39880 AC012308.1-201ENST00000451232 178 ntBASIC-0.19□□□□□ -2.44
CUX1P39880 AC093534.1-201ENST00000504977 132 ntBASIC-0.19□□□□□ -2.44
CUX1P39880 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC-0.19□□□□□ -2.44
CUX1P39880 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC-0.19□□□□□ -2.44
CUX1P39880 MIR4782-201ENST00000577987 79 ntBASIC-0.19□□□□□ -2.44
CUX1P39880 MIR4431-201ENST00000579990 94 ntBASIC-0.19□□□□□ -2.44
CUX1P39880 PRELID3BP2-201ENST00000605362 201 ntBASIC-0.19□□□□□ -2.44
CUX1P39880 MIR3976-201ENST00000606807 139 ntBASIC-0.19□□□□□ -2.44
CUX1P39880 RNU6-1210P-201ENST00000363775 107 ntBASIC-0.2□□□□□ -2.44
CUX1P39880 RAP1BP3-201ENST00000407180 549 ntBASIC-0.2□□□□□ -2.44
CUX1P39880 MTATP6P27-201ENST00000416987 621 ntBASIC-0.2□□□□□ -2.44
CUX1P39880 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC-0.2□□□□□ -2.44
CUX1P39880 MTCYBP11-201ENST00000447254 1109 ntBASIC-0.2□□□□□ -2.44
CUX1P39880 AL050341.1-201ENST00000447743 313 ntBASIC-0.2□□□□□ -2.44
CUX1P39880 RNU7-21P-201ENST00000459430 62 ntBASIC-0.2□□□□□ -2.44
CUX1P39880 HMGN1P12-201ENST00000499125 195 ntBASIC-0.2□□□□□ -2.44
CUX1P39880 AC009646.1-201ENST00000510455 318 ntBASIC-0.2□□□□□ -2.44
CUX1P39880 AC093519.1-201ENST00000566109 298 ntBASIC-0.2□□□□□ -2.44
CUX1P39880 AC090517.2-201ENST00000614966 680 ntBASIC-0.2□□□□□ -2.44
CUX1P39880 U6.101-201ENST00000637707 76 ntBASIC-0.2□□□□□ -2.44
CUX1P39880 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC-0.21□□□□□ -2.44
CUX1P39880 RNU6-862P-201ENST00000362804 105 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 RNU6-655P-201ENST00000362858 107 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 Y_RNA.132-201ENST00000363421 102 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 RNY3-201ENST00000365484 102 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 SNORD116-23-201ENST00000384645 92 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 RNU6-1300P-201ENST00000391046 108 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC-0.21□□□□□ -2.44
CUX1P39880 MTND5P2-201ENST00000442927 1142 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 FABP5P15-201ENST00000453566 214 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC-0.21□□□□□ -2.44
CUX1P39880 AC091874.1-201ENST00000511402 339 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 MTND5P13-201ENST00000513046 1079 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC-0.21□□□□□ -2.44
CUX1P39880 AC011195.1-201ENST00000578177 177 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 Y_RNA.757-201ENST00000578934 114 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 GHRLOS.1-201ENST00000610995 70 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC-0.21□□□□□ -2.44
CUX1P39880 AC063943.3-201ENST00000615562 356 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 SNORD3E-202ENST00000627253 216 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 SGO1P1-201ENST00000603525 1447 ntBASIC-0.21□□□□□ -2.44
CUX1P39880 RNU6-1123P-201ENST00000362347 106 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 RNU6-858P-201ENST00000362436 107 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 RNU6-1078P-201ENST00000364522 103 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC-0.22□□□□□ -2.44
CUX1P39880 RNU6-793P-201ENST00000384233 104 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 RNU6-891P-201ENST00000384280 111 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 AL357139.1-201ENST00000407792 426 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 AL359704.1-201ENST00000411586 781 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 ELOCP9-201ENST00000418624 239 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 AC123900.1-201ENST00000420390 96 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC-0.22□□□□□ -2.44
CUX1P39880 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC-0.22□□□□□ -2.44
CUX1P39880 MTCYBP15-201ENST00000433123 1127 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 MTND1P30-201ENST00000441241 901 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 MTCO3P17-201ENST00000443775 513 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC-0.22□□□□□ -2.44
CUX1P39880 AL353752.1-201ENST00000454946 260 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 MTCO1P31-201ENST00000506355 492 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 RNU6-947P-201ENST00000516264 106 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC-0.22□□□□□ -2.44
CUX1P39880 RNY1P9-201ENST00000532431 109 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 AC090888.2-201ENST00000559765 1144 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 AC097065.2-201ENST00000608159 533 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 uc_338.34-201ENST00000617467 174 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 AL596245.1-201ENST00000618994 362 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 AL031667.3-201ENST00000620124 655 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 7SK.10-201ENST00000621414 298 ntBASIC-0.22□□□□□ -2.44
CUX1P39880 snoU2_19.1-201ENST00000362361 80 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 RNU6-619P-201ENST00000365146 108 ntBASIC-0.23□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms