Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
MSH3P20585 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
MSH3P20585 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.41□□□□□ -2.02
MSH3P20585 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
MSH3P20585 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
MSH3P20585 RNU6-933P-201ENST00000384424 107 ntBASIC2.41□□□□□ -2.02
MSH3P20585 RNU6-790P-201ENST00000384479 105 ntBASIC2.41□□□□□ -2.02
MSH3P20585 SNORA41-201ENST00000384675 132 ntBASIC2.41□□□□□ -2.02
MSH3P20585 MIR147B-201ENST00000390185 80 ntBASIC2.41□□□□□ -2.02
MSH3P20585 RNA5SP390-201ENST00000410191 113 ntBASIC2.41□□□□□ -2.02
MSH3P20585 RNU6-370P-201ENST00000411008 104 ntBASIC2.41□□□□□ -2.02
MSH3P20585 RNU6-1245P-201ENST00000411130 106 ntBASIC2.41□□□□□ -2.02
MSH3P20585 AP000275.1-201ENST00000411943 390 ntBASIC2.41□□□□□ -2.02
MSH3P20585 CR769767.1-201ENST00000436337 346 ntBASIC2.41□□□□□ -2.02
MSH3P20585 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.41□□□□□ -2.02
MSH3P20585 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.41□□□□□ -2.02
MSH3P20585 AL441985.1-201ENST00000457727 251 ntBASIC2.41□□□□□ -2.02
MSH3P20585 SNORD19B-201ENST00000459623 84 ntBASIC2.41□□□□□ -2.02
MSH3P20585 RPS29P27-201ENST00000463711 170 ntBASIC2.41□□□□□ -2.02
MSH3P20585 AC114801.2-201ENST00000503825 781 ntBASIC2.41□□□□□ -2.02
MSH3P20585 RNA5SP402-201ENST00000517148 110 ntBASIC2.41□□□□□ -2.02
MSH3P20585 AP005902.1-201ENST00000521358 186 ntBASIC2.41□□□□□ -2.02
MSH3P20585 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.41□□□□□ -2.02
MSH3P20585 AC027176.1-201ENST00000560204 514 ntBASIC2.41□□□□□ -2.02
MSH3P20585 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.41□□□□□ -2.02
MSH3P20585 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC2.41□□□□□ -2.02
MSH3P20585 AP001836.1-201ENST00000604675 523 ntBASIC2.41□□□□□ -2.02
MSH3P20585 AC018889.1-201ENST00000605372 397 ntBASIC2.41□□□□□ -2.02
MSH3P20585 AP000654.2-201ENST00000605633 586 ntBASIC2.41□□□□□ -2.02
MSH3P20585 MIR3976-201ENST00000606807 139 ntBASIC2.41□□□□□ -2.02
MSH3P20585 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.41□□□□□ -2.02
MSH3P20585 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.41□□□□□ -2.02
MSH3P20585 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.41□□□□□ -2.02
MSH3P20585 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC2.41□□□□□ -2.02
MSH3P20585 MTND4LP32-201ENST00000636111 270 ntBASIC2.41□□□□□ -2.02
MSH3P20585 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.41□□□□□ -2.02
MSH3P20585 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
MSH3P20585 AC006026.1-201ENST00000444025 1803 ntBASIC2.4□□□□□ -2.02
MSH3P20585 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
MSH3P20585 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
MSH3P20585 Y_RNA.11-201ENST00000362375 109 ntBASIC2.4□□□□□ -2.03
MSH3P20585 RNU6-227P-201ENST00000362865 103 ntBASIC2.4□□□□□ -2.03
MSH3P20585 RNU6-1059P-201ENST00000363752 98 ntBASIC2.4□□□□□ -2.03
MSH3P20585 RNU6-1188P-201ENST00000363795 107 ntBASIC2.4□□□□□ -2.03
MSH3P20585 SNORA67.1-201ENST00000364749 141 ntBASIC2.4□□□□□ -2.03
MSH3P20585 RNU6-596P-201ENST00000365395 98 ntBASIC2.4□□□□□ -2.03
MSH3P20585 RNU6-842P-201ENST00000384269 107 ntBASIC2.4□□□□□ -2.03
MSH3P20585 Y_RNA.473-201ENST00000384333 102 ntBASIC2.4□□□□□ -2.03
MSH3P20585 SNORD116-29-201ENST00000384516 83 ntBASIC2.4□□□□□ -2.03
MSH3P20585 Y_RNA.594-201ENST00000410373 140 ntBASIC2.4□□□□□ -2.03
MSH3P20585 RNU6-1328P-201ENST00000410938 106 ntBASIC2.4□□□□□ -2.03
MSH3P20585 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.4□□□□□ -2.03
MSH3P20585 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.4□□□□□ -2.03
MSH3P20585 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.4□□□□□ -2.03
MSH3P20585 AL513328.1-201ENST00000446460 224 ntBASIC2.4□□□□□ -2.03
MSH3P20585 AL031659.1-201ENST00000447075 539 ntBASIC2.4□□□□□ -2.03
MSH3P20585 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.4□□□□□ -2.03
MSH3P20585 AC012308.1-201ENST00000451232 178 ntBASIC2.4□□□□□ -2.03
MSH3P20585 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.4□□□□□ -2.03
MSH3P20585 AP001324.2-201ENST00000461163 319 ntBASIC2.4□□□□□ -2.03
MSH3P20585 UBE2DNL-203ENST00000474922 222 ntBASIC2.4□□□□□ -2.03
MSH3P20585 SNORA31.6-201ENST00000516241 130 ntBASIC2.4□□□□□ -2.03
MSH3P20585 Y_RNA.670-201ENST00000516255 105 ntBASIC2.4□□□□□ -2.03
MSH3P20585 RNA5SP24-201ENST00000516478 95 ntBASIC2.4□□□□□ -2.03
MSH3P20585 SNORA31.11-201ENST00000516528 139 ntBASIC2.4□□□□□ -2.03
MSH3P20585 RNA5SP82-201ENST00000516707 92 ntBASIC2.4□□□□□ -2.03
MSH3P20585 Y_RNA.708-201ENST00000516950 96 ntBASIC2.4□□□□□ -2.03
MSH3P20585 Y_RNA.718-201ENST00000517110 102 ntBASIC2.4□□□□□ -2.03
MSH3P20585 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.4□□□□□ -2.03
MSH3P20585 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.4□□□□□ -2.03
MSH3P20585 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.4□□□□□ -2.03
MSH3P20585 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.4□□□□□ -2.03
MSH3P20585 AC090897.2-201ENST00000581715 130 ntBASIC2.4□□□□□ -2.03
MSH3P20585 MIR5690-201ENST00000583739 73 ntBASIC2.4□□□□□ -2.03
MSH3P20585 MIR3117-201ENST00000584034 78 ntBASIC2.4□□□□□ -2.03
MSH3P20585 AC011494.1-201ENST00000596454 237 ntBASIC2.4□□□□□ -2.03
MSH3P20585 AC078795.3-201ENST00000602913 472 ntBASIC2.4□□□□□ -2.03
MSH3P20585 MIR8076-201ENST00000611401 83 ntBASIC2.4□□□□□ -2.03
MSH3P20585 uc_338.14-201ENST00000613162 166 ntBASIC2.4□□□□□ -2.03
MSH3P20585 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.4□□□□□ -2.03
MSH3P20585 CTSLP2-204ENST00000629029 392 ntBASIC2.4□□□□□ -2.03
MSH3P20585 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.03
MSH3P20585 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.03
MSH3P20585 KPNA2P1-201ENST00000458289 1591 ntBASIC2.4□□□□□ -2.03
MSH3P20585 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.39□□□□□ -2.03
MSH3P20585 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
MSH3P20585 SNORD114-30-201ENST00000364448 72 ntBASIC2.39□□□□□ -2.03
MSH3P20585 Y_RNA.259-201ENST00000364619 101 ntBASIC2.39□□□□□ -2.03
MSH3P20585 SNORD32A-201ENST00000364805 84 ntBASIC2.39□□□□□ -2.03
MSH3P20585 MIR521-1-201ENST00000384902 87 ntBASIC2.39□□□□□ -2.03
MSH3P20585 SNORA75.4-201ENST00000391278 119 ntBASIC2.39□□□□□ -2.03
MSH3P20585 AL133475.1-201ENST00000404414 305 ntBASIC2.39□□□□□ -2.03
MSH3P20585 RNU6-174P-201ENST00000410406 106 ntBASIC2.39□□□□□ -2.03
MSH3P20585 RNU6-1304P-201ENST00000411374 106 ntBASIC2.39□□□□□ -2.03
MSH3P20585 AF228730.4-201ENST00000421457 183 ntBASIC2.39□□□□□ -2.03
MSH3P20585 MTND3P9-201ENST00000429526 346 ntBASIC2.39□□□□□ -2.03
MSH3P20585 AC236972.1-201ENST00000433225 199 ntBASIC2.39□□□□□ -2.03
MSH3P20585 AC236972.2-201ENST00000434979 310 ntBASIC2.39□□□□□ -2.03
MSH3P20585 AL445687.1-201ENST00000439946 251 ntBASIC2.39□□□□□ -2.03
MSH3P20585 RNU6-1213P-201ENST00000517075 94 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms