Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC4.15□□□□□ -1.75
LIG1P18858 MIR5571-201ENST00000577998 113 ntBASIC4.15□□□□□ -1.75
LIG1P18858 AC006133.1-201ENST00000617106 264 ntBASIC4.15□□□□□ -1.75
LIG1P18858 MIR6134-201ENST00000617606 109 ntBASIC4.15□□□□□ -1.75
LIG1P18858 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
LIG1P18858 CUL1P1-201ENST00000509510 2425 ntBASIC4.15□□□□□ -1.75
LIG1P18858 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
LIG1P18858 SNORA25.1-201ENST00000362326 128 ntBASIC4.14□□□□□ -1.75
LIG1P18858 RNU6-626P-201ENST00000363354 107 ntBASIC4.14□□□□□ -1.75
LIG1P18858 RNA5SP197-201ENST00000363357 119 ntBASIC4.14□□□□□ -1.75
LIG1P18858 Y_RNA.170-201ENST00000363746 110 ntBASIC4.14□□□□□ -1.75
LIG1P18858 Y_RNA.291-201ENST00000364886 113 ntBASIC4.14□□□□□ -1.75
LIG1P18858 Y_RNA.319-201ENST00000365138 92 ntBASIC4.14□□□□□ -1.75
LIG1P18858 RNA5SP240-201ENST00000365355 128 ntBASIC4.14□□□□□ -1.75
LIG1P18858 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
LIG1P18858 RNU1-73P-201ENST00000383971 164 ntBASIC4.14□□□□□ -1.75
LIG1P18858 SNORD116-20-201ENST00000384529 92 ntBASIC4.14□□□□□ -1.75
LIG1P18858 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
LIG1P18858 Y_RNA.590-201ENST00000410140 107 ntBASIC4.14□□□□□ -1.75
LIG1P18858 RNU6-651P-201ENST00000411040 105 ntBASIC4.14□□□□□ -1.75
LIG1P18858 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.14□□□□□ -1.75
LIG1P18858 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC4.14□□□□□ -1.75
LIG1P18858 AC007969.2-201ENST00000441891 191 ntBASIC4.14□□□□□ -1.75
LIG1P18858 Y_RNA.638-201ENST00000459374 113 ntBASIC4.14□□□□□ -1.75
LIG1P18858 AC117440.1-201ENST00000474107 571 ntBASIC4.14□□□□□ -1.75
LIG1P18858 SNORA31.1-201ENST00000515993 133 ntBASIC4.14□□□□□ -1.75
LIG1P18858 RNU6-1278P-201ENST00000516130 107 ntBASIC4.14□□□□□ -1.75
LIG1P18858 SNORA31.5-201ENST00000516190 133 ntBASIC4.14□□□□□ -1.75
LIG1P18858 SNORA27.4-201ENST00000516650 95 ntBASIC4.14□□□□□ -1.75
LIG1P18858 RNU6-58P-201ENST00000517143 103 ntBASIC4.14□□□□□ -1.75
LIG1P18858 AC012468.1-201ENST00000604888 430 ntBASIC4.14□□□□□ -1.75
LIG1P18858 RNU1-30P-201ENST00000606575 163 ntBASIC4.14□□□□□ -1.75
LIG1P18858 AC039056.2-201ENST00000622261 511 ntBASIC4.14□□□□□ -1.75
LIG1P18858 AC034229.5-201ENST00000624258 185 ntBASIC4.14□□□□□ -1.75
LIG1P18858 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
LIG1P18858 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
LIG1P18858 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
LIG1P18858 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
LIG1P18858 AC090740.1-201ENST00000623193 2262 ntBASIC4.14□□□□□ -1.75
LIG1P18858 AC022336.2-201ENST00000568966 2538 ntBASIC4.14□□□□□ -1.75
LIG1P18858 AL079305.1-201ENST00000623159 3008 ntBASIC4.13□□□□□ -1.75
LIG1P18858 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC4.13□□□□□ -1.75
LIG1P18858 MIR410-201ENST00000362222 80 ntBASIC4.13□□□□□ -1.75
LIG1P18858 Y_RNA.136-201ENST00000363444 102 ntBASIC4.13□□□□□ -1.75
LIG1P18858 SNORD115-8-201ENST00000363856 82 ntBASIC4.13□□□□□ -1.75
LIG1P18858 SNORD115-38-201ENST00000365037 82 ntBASIC4.13□□□□□ -1.75
LIG1P18858 RNU6-20P-201ENST00000384106 107 ntBASIC4.13□□□□□ -1.75
LIG1P18858 MIR23B-201ENST00000384832 97 ntBASIC4.13□□□□□ -1.75
LIG1P18858 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
LIG1P18858 PTMAP2-201ENST00000397627 327 ntBASIC4.13□□□□□ -1.75
LIG1P18858 AC074117.2-201ENST00000417130 397 ntBASIC4.13□□□□□ -1.75
LIG1P18858 AL035423.1-201ENST00000420331 213 ntBASIC4.13□□□□□ -1.75
LIG1P18858 AC006989.1-201ENST00000427212 131 ntBASIC4.13□□□□□ -1.75
LIG1P18858 AL512844.2-201ENST00000433990 593 ntBASIC4.13□□□□□ -1.75
LIG1P18858 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC4.13□□□□□ -1.75
LIG1P18858 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.13□□□□□ -1.75
LIG1P18858 RPL30P14-201ENST00000482744 348 ntBASIC4.13□□□□□ -1.75
LIG1P18858 AC006483.1-201ENST00000487308 313 ntBASIC4.13□□□□□ -1.75
LIG1P18858 Y_RNA.662-201ENST00000516028 97 ntBASIC4.13□□□□□ -1.75
LIG1P18858 RNA5SP164-201ENST00000516533 110 ntBASIC4.13□□□□□ -1.75
LIG1P18858 AC022559.1-201ENST00000520905 205 ntBASIC4.13□□□□□ -1.75
LIG1P18858 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.13□□□□□ -1.75
LIG1P18858 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
LIG1P18858 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.13□□□□□ -1.75
LIG1P18858 MIR4425-201ENST00000580572 84 ntBASIC4.13□□□□□ -1.75
LIG1P18858 MIR3158-1-201ENST00000583596 81 ntBASIC4.13□□□□□ -1.75
LIG1P18858 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.13□□□□□ -1.75
LIG1P18858 AC008749.1-201ENST00000597650 306 ntBASIC4.13□□□□□ -1.75
LIG1P18858 AL138963.2-201ENST00000605137 226 ntBASIC4.13□□□□□ -1.75
LIG1P18858 MIR6076-201ENST00000617521 113 ntBASIC4.13□□□□□ -1.75
LIG1P18858 AC021753.1-201ENST00000635724 168 ntBASIC4.13□□□□□ -1.75
LIG1P18858 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC4.13□□□□□ -1.75
LIG1P18858 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
LIG1P18858 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIG1P18858 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIG1P18858 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
LIG1P18858 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIG1P18858 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC4.12□□□□□ -1.75
LIG1P18858 RNU1-100P-201ENST00000365255 165 ntBASIC4.12□□□□□ -1.75
LIG1P18858 AP002088.1-201ENST00000382740 395 ntBASIC4.12□□□□□ -1.75
LIG1P18858 Y_RNA.446-201ENST00000384178 104 ntBASIC4.12□□□□□ -1.75
LIG1P18858 RNU6-514P-201ENST00000384208 107 ntBASIC4.12□□□□□ -1.75
LIG1P18858 MIR670-201ENST00000390142 98 ntBASIC4.12□□□□□ -1.75
LIG1P18858 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC4.12□□□□□ -1.75
LIG1P18858 HMGN2P30-201ENST00000423237 256 ntBASIC4.12□□□□□ -1.75
LIG1P18858 AL358075.3-201ENST00000426289 226 ntBASIC4.12□□□□□ -1.75
LIG1P18858 TRIAP1P1-201ENST00000427062 225 ntBASIC4.12□□□□□ -1.75
LIG1P18858 NDUFB4P6-201ENST00000436819 366 ntBASIC4.12□□□□□ -1.75
LIG1P18858 RPL37P4-201ENST00000448908 268 ntBASIC4.12□□□□□ -1.75
LIG1P18858 AL133162.1-201ENST00000463228 453 ntBASIC4.12□□□□□ -1.75
LIG1P18858 Y_RNA.679-201ENST00000516416 91 ntBASIC4.12□□□□□ -1.75
LIG1P18858 SNORA67.7-201ENST00000516664 135 ntBASIC4.12□□□□□ -1.75
LIG1P18858 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.12□□□□□ -1.75
LIG1P18858 AL391261.3-201ENST00000557194 520 ntBASIC4.12□□□□□ -1.75
LIG1P18858 MIR5695-201ENST00000579717 85 ntBASIC4.12□□□□□ -1.75
LIG1P18858 MIR4429-201ENST00000580105 73 ntBASIC4.12□□□□□ -1.75
LIG1P18858 AL713866.2-201ENST00000603579 219 ntBASIC4.12□□□□□ -1.75
LIG1P18858 AC019159.1-201ENST00000605094 187 ntBASIC4.12□□□□□ -1.75
LIG1P18858 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.12□□□□□ -1.75
LIG1P18858 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms