Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 SEPT14P8-201ENST00000508026 178 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 AC006445.2-201ENST00000510061 472 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 RNU5F-8P-201ENST00000515941 111 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 RNA5SP341-201ENST00000516261 117 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 SNORA81.3-201ENST00000517283 198 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 SNORD113-5-201ENST00000607261 78 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 AL365434.2-201ENST00000607979 234 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 AC011476.5-201ENST00000615594 130 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 AF117829.1-206ENST00000621883 3802 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 MFSD8-233ENST00000641482 4860 ntBASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 CEP170P1-201ENST00000502249 4587 ntBASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 Y_RNA.29-201ENST00000362570 113 ntBASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 Y_RNA.54-201ENST00000362766 105 ntBASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 RNU6-270P-201ENST00000364131 105 ntBASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 RNU6-159P-201ENST00000391080 106 ntBASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 SNORD12B-201ENST00000410433 91 ntBASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 SUMO1P3-201ENST00000439961 304 ntBASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 FCF1P8-201ENST00000510322 597 ntBASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 SERF1AP1-201ENST00000514575 187 ntBASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 AL391261.3-201ENST00000557194 520 ntBASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 MIR4276-201ENST00000584832 70 ntBASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.41□□□□□ -1.7
CCDC87Q9NVE4 AC018555.1-201ENST00000567548 1980 ntBASIC4.4□□□□□ -1.7
CCDC87Q9NVE4 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
CCDC87Q9NVE4 Z83843.1-201ENST00000604070 3685 ntBASIC4.4□□□□□ -1.7
CCDC87Q9NVE4 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.4□□□□□ -1.7
CCDC87Q9NVE4 Y_RNA.16-201ENST00000362421 102 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 SNORA80A-201ENST00000363922 136 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 RNU6-280P-201ENST00000364145 104 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 RNU6-281P-201ENST00000384212 103 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 Y_RNA.555-201ENST00000384673 110 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 SNORA53-201ENST00000391141 249 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 AL390729.2-201ENST00000416137 156 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 AC244670.1-201ENST00000436879 112 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 AC005002.2-201ENST00000438228 269 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 RN7SL594P-201ENST00000470590 287 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 RN7SL429P-201ENST00000479090 223 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 RN7SL489P-201ENST00000486185 223 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 RN7SL327P-201ENST00000488659 223 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 BTF3L4P4-201ENST00000506381 449 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 RNU6-581P-201ENST00000516214 105 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 RNA5SP54-201ENST00000516951 92 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 RNU6-58P-201ENST00000517143 103 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 MDM2-232ENST00000544561 213 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 AK6P2-201ENST00000549020 471 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 AC130289.1-201ENST00000577321 73 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 RN7SL853P-201ENST00000617250 223 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 MIR6076-201ENST00000617521 113 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 MIR3199-2-201ENST00000636243 86 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 AC002546.1-201ENST00000588041 2504 ntBASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC87Q9NVE4 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 Y_RNA.65-201ENST00000362846 100 ntBASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 Y_RNA.277-201ENST00000364754 102 ntBASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 MIR10B-201ENST00000385011 110 ntBASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 AL591034.1-201ENST00000407447 340 ntBASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 RNU2-20P-201ENST00000410425 191 ntBASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 RNU2-14P-201ENST00000411053 191 ntBASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 RPS26P42-201ENST00000413485 326 ntBASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 PIGPP3-201ENST00000425307 415 ntBASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 AL138752.1-201ENST00000452964 351 ntBASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 AP001025.1-201ENST00000486139 332 ntBASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 RPS29P20-201ENST00000489592 171 ntBASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 AC006199.1-201ENST00000548728 219 ntBASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 U2.14-201ENST00000615943 113 ntBASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC87Q9NVE4 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 RNU6-926P-201ENST00000384075 107 ntBASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 SNORA26.3-201ENST00000391119 136 ntBASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 RPL23AP82-202ENST00000427528 469 ntBASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 WARS2P1-201ENST00000429678 537 ntBASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 SNRPGP7-201ENST00000469016 106 ntBASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 RNU6-567P-201ENST00000516746 107 ntBASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 SCARNA24.2-201ENST00000516968 130 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms