Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC046143.2-201ENST00000609789 160 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 AC004908.3-201ENST00000610248 625 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 AL627230.6-201ENST00000611129 280 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 uc_338.20-201ENST00000621563 178 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 MIR6766-201ENST00000622641 72 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 AC091932.3-201ENST00000624223 323 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 AP000560.1-201ENST00000624150 1937 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 RNU4-75P-201ENST00000364621 146 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
DDX28Q9NUL7 RNU6-1106P-201ENST00000390845 107 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 RNA5SP338-201ENST00000410495 85 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 RNU2-48P-201ENST00000410694 191 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 AC009963.1-201ENST00000417265 157 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.01□□□□□ -2.09
DDX28Q9NUL7 DPH3P2-201ENST00000422618 250 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 AL590556.1-201ENST00000423231 483 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 SNAP23P1-201ENST00000433229 246 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 AC018634.1-201ENST00000437554 401 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.01□□□□□ -2.09
DDX28Q9NUL7 MTCO2P3-201ENST00000442543 421 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.01□□□□□ -2.09
DDX28Q9NUL7 MTND3P16-201ENST00000452205 344 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 RPS29P21-201ENST00000496272 170 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 HMGB1P35-201ENST00000503360 598 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.01□□□□□ -2.09
DDX28Q9NUL7 RNU6-1038P-201ENST00000516516 104 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 RNU6-667P-201ENST00000517186 102 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 IGKV3-31-201ENST00000523109 329 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 AC022616.8-201ENST00000533569 253 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.01□□□□□ -2.09
DDX28Q9NUL7 AC233702.2-202ENST00000562547 291 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 AC026271.5-201ENST00000577873 130 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.01□□□□□ -2.09
DDX28Q9NUL7 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.01□□□□□ -2.09
DDX28Q9NUL7 AC092747.3-201ENST00000603769 301 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 SNRPGP17-201ENST00000603780 214 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 AC093783.1-201ENST00000612976 329 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 YWHAEP7-203ENST00000622054 312 ntBASIC2.01□□□□□ -2.09
DDX28Q9NUL7 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
DDX28Q9NUL7 RNA5SP289-201ENST00000362332 137 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 RNU6-944P-201ENST00000364023 107 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 Y_RNA.378-201ENST00000365652 113 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 RNU6-611P-201ENST00000384276 104 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2□□□□□ -2.09
DDX28Q9NUL7 AC078809.1-201ENST00000427601 140 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 CBX3P6-201ENST00000430257 527 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 AL139415.2-201ENST00000431968 163 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 MTCO2P7-201ENST00000446518 666 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2□□□□□ -2.09
DDX28Q9NUL7 RPL21P99-201ENST00000480369 423 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 Y_RNA.654-201ENST00000497848 106 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2□□□□□ -2.09
DDX28Q9NUL7 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2□□□□□ -2.09
DDX28Q9NUL7 RNU6-1069P-201ENST00000516612 133 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 AC087854.1-201ENST00000519706 414 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 AL118558.2-201ENST00000556294 238 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 HMGB1P33-201ENST00000563485 527 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2□□□□□ -2.09
DDX28Q9NUL7 MIR3136-201ENST00000583498 78 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 AL109918.3-201ENST00000603072 338 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 AC022202.1-201ENST00000613515 211 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 AC015540.1-201ENST00000615828 501 ntBASIC2□□□□□ -2.09
DDX28Q9NUL7 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.99□□□□□ -2.09
DDX28Q9NUL7 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.99□□□□□ -2.09
DDX28Q9NUL7 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.99□□□□□ -2.09
DDX28Q9NUL7 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
DDX28Q9NUL7 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
DDX28Q9NUL7 SNORD32A-201ENST00000364805 84 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 RNU4-20P-201ENST00000365601 151 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 RNU6-142P-201ENST00000384019 107 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
DDX28Q9NUL7 Y_RNA.597-201ENST00000410463 100 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 RN7SKP61-201ENST00000410642 295 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 MTND3P21-201ENST00000433774 331 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AC244670.1-201ENST00000436879 112 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 SEPT14P3-201ENST00000439401 183 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.99□□□□□ -2.09
DDX28Q9NUL7 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AL732372.2-207ENST00000445840 183 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 SEPT14P2-201ENST00000453405 183 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 PMCHL2-203ENST00000457791 237 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 SNRPGP7-201ENST00000469016 106 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
DDX28Q9NUL7 SEPT14P4-201ENST00000513445 186 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 RNU6-506P-201ENST00000516553 94 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 SNORD60.2-201ENST00000516883 86 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AC107953.1-201ENST00000522216 297 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 FO082796.1-201ENST00000523795 183 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.99□□□□□ -2.09
DDX28Q9NUL7 MIR4769-201ENST00000584126 77 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AC078899.2-201ENST00000595282 212 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AL031274.2-201ENST00000599419 203 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AL162413.1-201ENST00000603198 110 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 BNIP3P10-201ENST00000605360 577 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AC092954.2-201ENST00000609103 430 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AC063943.3-201ENST00000615562 356 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms