Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 GZMAP1-201ENST00000503054 631 ntBASIC2.6□□□□□ -1.99
PCDH9Q9HC56 Y_RNA.708-201ENST00000516950 96 ntBASIC2.6□□□□□ -1.99
PCDH9Q9HC56 SNORA31.18-201ENST00000517043 134 ntBASIC2.6□□□□□ -1.99
PCDH9Q9HC56 Y_RNA.718-201ENST00000517110 102 ntBASIC2.6□□□□□ -1.99
PCDH9Q9HC56 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.6□□□□□ -1.99
PCDH9Q9HC56 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.6□□□□□ -1.99
PCDH9Q9HC56 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.6□□□□□ -1.99
PCDH9Q9HC56 AC018462.2-201ENST00000605375 395 ntBASIC2.6□□□□□ -1.99
PCDH9Q9HC56 AL133215.3-201ENST00000609801 448 ntBASIC2.6□□□□□ -1.99
PCDH9Q9HC56 UCA1.1-201ENST00000620952 75 ntBASIC2.6□□□□□ -1.99
PCDH9Q9HC56 AL669831.3-213ENST00000636676 183 ntBASIC2.6□□□□□ -1.99
PCDH9Q9HC56 AC241585.2-209ENST00000638217 143 ntBASIC2.6□□□□□ -1.99
PCDH9Q9HC56 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
PCDH9Q9HC56 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.6□□□□□ -1.99
PCDH9Q9HC56 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.59□□□□□ -1.99
PCDH9Q9HC56 RBBP8P1-201ENST00000449447 1844 ntBASIC2.59□□□□□ -1.99
PCDH9Q9HC56 KPNA2P1-201ENST00000458289 1591 ntBASIC2.59□□□□□ -1.99
PCDH9Q9HC56 RNU6-1188P-201ENST00000363795 107 ntBASIC2.59□□□□□ -1.99
PCDH9Q9HC56 RNU6-593P-201ENST00000364716 112 ntBASIC2.59□□□□□ -1.99
PCDH9Q9HC56 Y_RNA.460-201ENST00000384255 102 ntBASIC2.59□□□□□ -1.99
PCDH9Q9HC56 RNU6-692P-201ENST00000384496 107 ntBASIC2.59□□□□□ -1.99
PCDH9Q9HC56 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
PCDH9Q9HC56 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
PCDH9Q9HC56 MTND4P28-201ENST00000426217 387 ntBASIC2.59□□□□□ -1.99
PCDH9Q9HC56 SUMO1P4-201ENST00000429430 302 ntBASIC2.59□□□□□ -1.99
PCDH9Q9HC56 Y_RNA.653-201ENST00000459091 95 ntBASIC2.59□□□□□ -1.99
PCDH9Q9HC56 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.59□□□□□ -1.99
PCDH9Q9HC56 HMGN1P13-201ENST00000505795 138 ntBASIC2.59□□□□□ -1.99
PCDH9Q9HC56 PTP4A1P4-201ENST00000512479 322 ntBASIC2.59□□□□□ -1.99
PCDH9Q9HC56 ACA59.1-201ENST00000515966 143 ntBASIC2.59□□□□□ -1.99
PCDH9Q9HC56 AP005902.1-201ENST00000521358 186 ntBASIC2.59□□□□□ -1.99
PCDH9Q9HC56 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
PCDH9Q9HC56 AC090616.3-201ENST00000582184 217 ntBASIC2.59□□□□□ -1.99
PCDH9Q9HC56 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.59□□□□□ -2
PCDH9Q9HC56 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
PCDH9Q9HC56 Z82195.2-201ENST00000612348 18351 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.58□□□□□ -2
PCDH9Q9HC56 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
PCDH9Q9HC56 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.58□□□□□ -2
PCDH9Q9HC56 Y_RNA.48-201ENST00000362710 103 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 RNA5SP456-201ENST00000364002 114 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 Y_RNA.813-201ENST00000364639 102 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 U8.8-201ENST00000365399 135 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 Y_RNA.404-201ENST00000383978 102 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 RNU6-331P-201ENST00000384724 107 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 MIR544A-201ENST00000384855 91 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 Y_RNA.579-201ENST00000390939 94 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 RNY4P36-201ENST00000391116 96 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 RNU6-1140P-201ENST00000410517 106 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 AC096649.2-201ENST00000416186 393 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.58□□□□□ -2
PCDH9Q9HC56 RPL23AP50-201ENST00000434149 455 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 AC004383.1-201ENST00000438135 289 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 AC243964.1-201ENST00000441814 261 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 MTCO3P10-201ENST00000455912 772 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 RPL30P12-201ENST00000474666 353 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 FO393415.2-201ENST00000480085 343 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 MRPS36P2-201ENST00000512569 299 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 SNORD19.2-201ENST00000516978 73 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 SNORA31.23-201ENST00000517219 133 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 AC109446.1-201ENST00000566172 220 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 CPDP1-201ENST00000579660 283 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 MIR4273-201ENST00000582824 84 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 AC018889.1-201ENST00000605372 397 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 AP000654.2-201ENST00000605633 586 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 AC024581.2-201ENST00000619986 252 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 MIR3529-201ENST00000637713 78 ntBASIC2.58□□□□□ -2
PCDH9Q9HC56 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
PCDH9Q9HC56 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.58□□□□□ -2
PCDH9Q9HC56 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.58□□□□□ -2
PCDH9Q9HC56 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
PCDH9Q9HC56 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.57□□□□□ -2
PCDH9Q9HC56 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
PCDH9Q9HC56 RNU6-842P-201ENST00000384269 107 ntBASIC2.57□□□□□ -2
PCDH9Q9HC56 RNU6-843P-201ENST00000384454 104 ntBASIC2.57□□□□□ -2
PCDH9Q9HC56 RNU6-310P-201ENST00000384655 107 ntBASIC2.57□□□□□ -2
PCDH9Q9HC56 RPS29P13-201ENST00000402041 169 ntBASIC2.57□□□□□ -2
PCDH9Q9HC56 RNA5SP181-201ENST00000410246 98 ntBASIC2.57□□□□□ -2
PCDH9Q9HC56 Y_RNA.646-201ENST00000410980 101 ntBASIC2.57□□□□□ -2
PCDH9Q9HC56 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.57□□□□□ -2
PCDH9Q9HC56 AC138623.1-201ENST00000418060 216 ntBASIC2.57□□□□□ -2
PCDH9Q9HC56 AL133396.1-201ENST00000432048 687 ntBASIC2.57□□□□□ -2
PCDH9Q9HC56 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.57□□□□□ -2
PCDH9Q9HC56 AL441985.1-201ENST00000457727 251 ntBASIC2.57□□□□□ -2
PCDH9Q9HC56 SNORD5.1-201ENST00000458800 75 ntBASIC2.57□□□□□ -2
PCDH9Q9HC56 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.57□□□□□ -2
PCDH9Q9HC56 RNU6-1153P-201ENST00000516760 105 ntBASIC2.57□□□□□ -2
PCDH9Q9HC56 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.57□□□□□ -2
PCDH9Q9HC56 AC011494.1-201ENST00000596454 237 ntBASIC2.57□□□□□ -2
PCDH9Q9HC56 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
PCDH9Q9HC56 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
PCDH9Q9HC56 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
PCDH9Q9HC56 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.56□□□□□ -2
PCDH9Q9HC56 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
PCDH9Q9HC56 Y_RNA.123-201ENST00000363338 102 ntBASIC2.56□□□□□ -2
PCDH9Q9HC56 RPS20P15-201ENST00000412792 311 ntBASIC2.56□□□□□ -2
PCDH9Q9HC56 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms