Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AC034114.1-201ENST00000520293 285 ntBASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 AC007375.1-201ENST00000554513 578 ntBASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 RPS29P30-201ENST00000600975 111 ntBASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 RMST_6.1-201ENST00000611980 203 ntBASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 AC092628.2-201ENST00000622492 339 ntBASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 AC018692.3-201ENST00000623929 123 ntBASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 AC093908.1-201ENST00000623125 8092 ntBASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 AL353743.1-202ENST00000431724 1695 ntBASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 RNU6-1285P-201ENST00000363480 105 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 SNORD56.3-201ENST00000363507 71 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 U3.19-201ENST00000390893 196 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 RNU6-750P-201ENST00000390946 107 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 SNORA26.3-201ENST00000391119 136 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 AC096649.2-201ENST00000416186 393 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 AL159169.1-201ENST00000421119 127 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 ELOCP20-201ENST00000422460 345 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 AL365496.1-201ENST00000426885 215 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 AC244670.1-201ENST00000436879 112 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 DYNLT3P2-201ENST00000442517 295 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 OSTCP8-201ENST00000445117 448 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 PHBP14-201ENST00000512887 367 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 AL442163.3-201ENST00000554110 156 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 MYL12BP1-201ENST00000569826 507 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 AC090617.3-201ENST00000573670 475 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 UBL5P2-201ENST00000583788 219 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 AL137843.1-201ENST00000605078 385 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 AC096577.2-201ENST00000611455 153 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 AL359198.2-201ENST00000611836 194 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 AC073476.4-201ENST00000628409 72 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 Z75746.1-201ENST00000440243 2080 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 AC007256.1-201ENST00000392253 2765 ntBASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
PCIF1Q9H4Z3 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 Y_RNA.26-201ENST00000362539 101 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 Y_RNA.27-201ENST00000362540 103 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 Y_RNA.214-201ENST00000364201 112 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 Y_RNA.276-201ENST00000364732 109 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 U3.13-201ENST00000364804 214 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 RNU6-702P-201ENST00000364982 107 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 U8.10-201ENST00000384260 133 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 Y_RNA.471-201ENST00000384312 102 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 MIR487A-201ENST00000385009 80 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 RNU6-130P-201ENST00000411112 103 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 AL353705.1-201ENST00000433468 480 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 RPEP5-201ENST00000441137 268 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 FCF1P4-201ENST00000448326 183 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 RN7SL807P-201ENST00000470923 297 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 AC010469.2-201ENST00000496412 480 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 SNORA25.11-201ENST00000515935 105 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 RNU5B-3P-201ENST00000516601 115 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 AC091144.1-201ENST00000519573 138 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 AP002770.2-201ENST00000543613 532 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 MIR3186-201ENST00000577404 85 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 AL391813.1-201ENST00000603098 260 ntBASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
PCIF1Q9H4Z3 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 AC092268.1-201ENST00000342691 405 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 RNU1-76P-201ENST00000362903 159 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 Y_RNA.401-201ENST00000383965 117 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 MIR153-2-201ENST00000385225 87 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 AC078809.1-201ENST00000427601 140 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 AP000705.1-201ENST00000454567 350 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 snoU13.6-201ENST00000458785 104 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 AP000870.1-201ENST00000472927 406 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 AC109925.1-201ENST00000478069 331 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 RNA5SP217-201ENST00000515959 91 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 SNORA31.16-201ENST00000516773 139 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 AC027288.2-201ENST00000553028 243 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 AC025281.1-201ENST00000567026 265 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 RPS15AP11-201ENST00000594193 385 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 AC006006.1-201ENST00000603082 144 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 AL355877.2-201ENST00000603670 358 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 AC107871.2-201ENST00000612894 502 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 U6.92-201ENST00000636464 89 ntBASIC3.43□□□□□ -1.86
PCIF1Q9H4Z3 AC002543.1-201ENST00000299783 1954 ntBASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms