| HOXD1 | Q9GZZ0 | AC006023.1-201 | ENST00000603944 | 259 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | LINC02112-205 | ENST00000606744 | 236 nt | TSL 1 (best) BASIC | 2.21 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AL355073.2-201 | ENST00000612106 | 557 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AL359854.1-201 | ENST00000614203 | 1594 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC023490.1-201 | ENST00000614584 | 375 nt | TSL 2 BASIC | 2.21 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC092794.2-201 | ENST00000620933 | 563 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC011718.1-201 | ENST00000622906 | 375 nt | TSL 1 (best) BASIC | 2.21 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | Z75746.1-201 | ENST00000440243 | 2080 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AKAP9-203 | ENST00000359028 | 12247 nt | APPRIS ALT2 TSL 5 BASIC | 2.21 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | TANK-201 | ENST00000259075 | 2152 nt | APPRIS P1 TSL 1 (best) BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | ANKAR-201 | ENST00000313581 | 4391 nt | APPRIS P1 TSL 1 (best) BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | HAUS6P2-201 | ENST00000433254 | 2404 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC131280.1-202 | ENST00000624067 | 4211 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | APCS-201 | ENST00000255040 | 926 nt | APPRIS P1 TSL 1 (best) BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RNU6-529P-201 | ENST00000363383 | 104 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | GSTA3-202 | ENST00000370968 | 775 nt | TSL 1 (best) BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RNU6-306P-201 | ENST00000384617 | 107 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AL513475.1-201 | ENST00000406602 | 315 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RN7SKP32-201 | ENST00000410167 | 303 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RNU6-1245P-201 | ENST00000411130 | 106 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RNU6-325P-201 | ENST00000411132 | 105 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AL030996.1-201 | ENST00000411430 | 235 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC083867.1-201 | ENST00000413567 | 457 nt | TSL 3 BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | USP9YP8-201 | ENST00000441913 | 500 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | LINC01710-201 | ENST00000446002 | 390 nt | TSL 5 BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RPL39P29-201 | ENST00000447779 | 157 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AL034345.2-203 | ENST00000453417 | 383 nt | TSL 3 BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RPL9P9-202 | ENST00000466501 | 579 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AL049873.1-201 | ENST00000480540 | 376 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC092666.1-201 | ENST00000492054 | 573 nt | TSL 4 BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC026436.1-201 | ENST00000510537 | 270 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | COX6CP5-201 | ENST00000527162 | 228 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC005668.1-201 | ENST00000571142 | 476 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | MIR3199-1-201 | ENST00000582434 | 88 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AL356280.1-201 | ENST00000603614 | 379 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RNU6-91P-201 | ENST00000607774 | 107 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC024581.2-201 | ENST00000619986 | 252 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | PARPBP-203 | ENST00000392911 | 1916 nt | TSL 5 BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC080128.1-201 | ENST00000474389 | 1917 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | PCDH11Y-203 | ENST00000362095 | 4220 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.2 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | MT-ND1-201 | ENST00000361390 | 956 nt | APPRIS P1 BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | SNORD114-19-201 | ENST00000363072 | 75 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RNU6-461P-201 | ENST00000364195 | 107 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | U3.13-201 | ENST00000364804 | 214 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RNU6-487P-201 | ENST00000365430 | 104 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | SET-203 | ENST00000372688 | 801 nt | TSL 2 BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AL356432.1-201 | ENST00000405809 | 419 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | MIR548F5-201 | ENST00000408421 | 86 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RNA5SP390-201 | ENST00000410191 | 113 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC012370.1-201 | ENST00000419244 | 530 nt | TSL 3 BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC097463.2-201 | ENST00000421074 | 142 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RPL30P4-201 | ENST00000429309 | 333 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | MTND3P9-201 | ENST00000429526 | 346 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | SNAP23P1-201 | ENST00000433229 | 246 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC004869.2-201 | ENST00000436501 | 229 nt | TSL 3 BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | HMGB1P18-201 | ENST00000438801 | 619 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AL138900.1-201 | ENST00000449345 | 399 nt | TSL 3 BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | MAMDC2-AS1-205 | ENST00000451488 | 317 nt | TSL 3 BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | LIAS-206 | ENST00000513731 | 826 nt | TSL 5 BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RNU6-612P-201 | ENST00000516909 | 102 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC139497.1-201 | ENST00000524042 | 501 nt | TSL 5 BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC021269.2-201 | ENST00000532318 | 330 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC079598.5-201 | ENST00000547460 | 117 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC009127.3-201 | ENST00000570531 | 403 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | UBE2V2P2-201 | ENST00000587677 | 504 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | BNIP3P16-201 | ENST00000589779 | 534 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | MIR3976-201 | ENST00000606807 | 139 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AL512625.3-207 | ENST00000609749 | 477 nt | TSL 3 BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | LINC01002-202 | ENST00000631412 | 459 nt | TSL 5 BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | USP53-202 | ENST00000450251 | 6072 nt | APPRIS P1 TSL 5 BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | CAPS2-203 | ENST00000393284 | 3430 nt | APPRIS P1 TSL 1 (best) BASIC | 2.19 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | CCPG1-203 | ENST00000442196 | 3453 nt | APPRIS P1 TSL 2 BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | MIER3-202 | ENST00000381199 | 5188 nt | APPRIS ALT1 TSL 1 (best) BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | MTND5P30-201 | ENST00000452896 | 1731 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AL596028.1-201 | ENST00000326971 | 197 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | COMMD6-201 | ENST00000355801 | 486 nt | TSL 2 BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | MIR21-201 | ENST00000362134 | 72 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RNU6-212P-201 | ENST00000362642 | 104 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | Y_RNA.40-201 | ENST00000362645 | 93 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | Y_RNA.70-201 | ENST00000362886 | 110 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RNU1-51P-201 | ENST00000365345 | 176 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RNU1-52P-201 | ENST00000384190 | 164 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | Z82205.1-201 | ENST00000428456 | 297 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AL645568.3-201 | ENST00000433683 | 316 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AL035634.1-201 | ENST00000446768 | 372 nt | TSL 2 BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | MTND5P20-201 | ENST00000448677 | 143 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | MTND1P17-201 | ENST00000448961 | 204 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | LINC01077-201 | ENST00000452288 | 413 nt | TSL 3 BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AL139109.1-201 | ENST00000455491 | 297 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | MTND4P17-201 | ENST00000470444 | 350 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | MTCO1P29-201 | ENST00000496868 | 288 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC091874.1-201 | ENST00000511402 | 339 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC010210.1-203 | ENST00000513905 | 260 nt | TSL 3 BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RNA5SP112-201 | ENST00000515937 | 99 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | RNU6ATAC9P-201 | ENST00000516210 | 116 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | Y_RNA.702-201 | ENST00000516843 | 96 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | LINC02055-204 | ENST00000521034 | 432 nt | TSL 5 BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC124290.1-202 | ENST00000523342 | 387 nt | TSL 3 BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | EAF1-AS1-207 | ENST00000599742 | 772 nt | TSL 5 BASIC | 2.18 | □□□□□ -2.06 | | |
| HOXD1 | Q9GZZ0 | AC103810.6-201 | ENST00000606708 | 136 nt | BASIC | 2.18 | □□□□□ -2.06 | | |