Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC073464.1-201ENST00000429823 534 ntBASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 AC016700.2-201ENST00000446011 156 ntBASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 AC015911.1-201ENST00000495111 156 ntBASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 RPS29P21-201ENST00000496272 170 ntBASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 AC009646.1-201ENST00000510455 318 ntBASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 AC087441.2-201ENST00000529141 262 ntBASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 AC016256.1-201ENST00000547971 354 ntBASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 HSPE1P4-201ENST00000550617 308 ntBASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 MIR4298-201ENST00000584380 73 ntBASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 AC005786.1-201ENST00000588553 154 ntBASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 AC107304.1-201ENST00000604229 296 ntBASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 MIR1248-201ENST00000629190 106 ntBASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 AC241585.2-209ENST00000638217 143 ntBASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
CHMP4AQ9BY43 RNU6-552P-201ENST00000362869 119 ntBASIC2.74□□□□□ -1.97
CHMP4AQ9BY43 RNU6-743P-201ENST00000364151 106 ntBASIC2.74□□□□□ -1.97
CHMP4AQ9BY43 OR5H15-201ENST00000383696 930 ntBASIC2.74□□□□□ -1.97
CHMP4AQ9BY43 SNORD116-9-201ENST00000384000 95 ntBASIC2.74□□□□□ -1.97
CHMP4AQ9BY43 SNORD116-3-201ENST00000384287 95 ntBASIC2.74□□□□□ -1.97
CHMP4AQ9BY43 SNORD116-7-201ENST00000384404 95 ntBASIC2.74□□□□□ -1.97
CHMP4AQ9BY43 SNORD116-5-201ENST00000384462 95 ntBASIC2.74□□□□□ -1.97
CHMP4AQ9BY43 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.74□□□□□ -1.97
CHMP4AQ9BY43 VN1R108P-201ENST00000431580 830 ntBASIC2.74□□□□□ -1.97
CHMP4AQ9BY43 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.74□□□□□ -1.97
CHMP4AQ9BY43 AL513124.1-201ENST00000450410 614 ntBASIC2.74□□□□□ -1.97
CHMP4AQ9BY43 RPS3AP17-201ENST00000472594 777 ntBASIC2.74□□□□□ -1.97
CHMP4AQ9BY43 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.74□□□□□ -1.97
CHMP4AQ9BY43 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.74□□□□□ -1.97
CHMP4AQ9BY43 AC136475.10-201ENST00000620253 385 ntBASIC2.74□□□□□ -1.97
CHMP4AQ9BY43 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 FTH1P25-201ENST00000447665 469 ntBASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 AL031274.1-201ENST00000450334 232 ntBASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 RNA5SP57-201ENST00000459463 123 ntBASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 RNU6-991P-201ENST00000516168 107 ntBASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 GNAI2P1-201ENST00000541815 315 ntBASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 AC004223.2-201ENST00000590309 544 ntBASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 AC002044.1-201ENST00000606707 158 ntBASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CHMP4AQ9BY43 U3.9-201ENST00000363823 204 ntBASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 SNORD32A-201ENST00000364805 84 ntBASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 Y_RNA.296-201ENST00000364930 108 ntBASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 Y_RNA.332-201ENST00000365271 113 ntBASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 SNORD116-2-201ENST00000384274 95 ntBASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 SNORD116-6-201ENST00000384711 96 ntBASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 RNU6-903P-201ENST00000391270 109 ntBASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 HMGB1P29-201ENST00000505659 499 ntBASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 AC008834.1-201ENST00000511612 175 ntBASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 RNU2-44P-201ENST00000516795 194 ntBASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 AC078814.3-201ENST00000553036 491 ntBASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 HSBP1P1-201ENST00000555205 166 ntBASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 MIR3611-201ENST00000584484 83 ntBASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 AL359697.1-201ENST00000624879 587 ntBASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CHMP4AQ9BY43 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.97
CHMP4AQ9BY43 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
CHMP4AQ9BY43 RNU6-692P-201ENST00000384496 107 ntBASIC2.71□□□□□ -1.98
CHMP4AQ9BY43 AL030996.1-201ENST00000411430 235 ntBASIC2.71□□□□□ -1.98
CHMP4AQ9BY43 CDK8P2-201ENST00000415020 547 ntBASIC2.71□□□□□ -1.98
CHMP4AQ9BY43 MTCO2P3-201ENST00000442543 421 ntBASIC2.71□□□□□ -1.98
CHMP4AQ9BY43 RNU7-138P-201ENST00000459479 64 ntBASIC2.71□□□□□ -1.98
CHMP4AQ9BY43 AC104435.1-201ENST00000483483 166 ntBASIC2.71□□□□□ -1.98
CHMP4AQ9BY43 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.71□□□□□ -1.98
CHMP4AQ9BY43 AC079140.3-201ENST00000511111 550 ntBASIC2.71□□□□□ -1.98
CHMP4AQ9BY43 AP005660.1-201ENST00000522972 293 ntBASIC2.71□□□□□ -1.98
CHMP4AQ9BY43 MTND4P7-201ENST00000523876 130 ntBASIC2.71□□□□□ -1.98
CHMP4AQ9BY43 HIF1AP1-201ENST00000553642 175 ntBASIC2.71□□□□□ -1.98
CHMP4AQ9BY43 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 Y_RNA.159-201ENST00000363674 87 ntBASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 SNORD116-1-201ENST00000384335 95 ntBASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 AC068050.1-201ENST00000394891 380 ntBASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 RNA5SP501-201ENST00000410990 112 ntBASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 AP000275.1-201ENST00000411943 390 ntBASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 AL445646.1-201ENST00000431784 216 ntBASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 CYP4A27P-201ENST00000567218 190 ntBASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 AC007684.1-201ENST00000609671 477 ntBASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.7□□□□□ -1.98
CHMP4AQ9BY43 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms