Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AP000560.1-201ENST00000624150 1937 ntBASIC1.59□□□□□ -2.15
CDX2Q99626 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
CDX2Q99626 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
CDX2Q99626 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.58□□□□□ -2.16
CDX2Q99626 RNU6-1010P-201ENST00000362757 107 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 U8.3-201ENST00000363321 132 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 RNU5F-7P-201ENST00000363696 115 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 RNY1P4-201ENST00000384595 115 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 MIR578-201ENST00000384828 96 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 RNU6-780P-201ENST00000391030 104 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
CDX2Q99626 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
CDX2Q99626 AL133475.1-201ENST00000404414 305 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 BX295541.1-201ENST00000417774 250 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 AC010975.2-201ENST00000427781 588 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.58□□□□□ -2.16
CDX2Q99626 MTND1P18-201ENST00000448191 573 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC1.58□□□□□ -2.16
CDX2Q99626 AL441985.1-201ENST00000457727 251 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 AC107032.1-201ENST00000485945 480 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 ARL2BPP4-201ENST00000506854 471 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 RNU6-123P-201ENST00000516163 102 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 RNU2-46P-201ENST00000517038 113 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.58□□□□□ -2.16
CDX2Q99626 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.58□□□□□ -2.16
CDX2Q99626 AC008521.1-201ENST00000587471 187 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 AC005034.5-201ENST00000604219 466 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 AC012557.2-201ENST00000605919 418 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 AC026585.1-201ENST00000619582 524 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 AC068792.1-201ENST00000621354 417 ntBASIC1.58□□□□□ -2.16
CDX2Q99626 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.58□□□□□ -2.16
CDX2Q99626 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.58□□□□□ -2.16
CDX2Q99626 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.58□□□□□ -2.16
CDX2Q99626 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.57□□□□□ -2.16
CDX2Q99626 AC008555.8-201ENST00000623602 2168 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 FGF7P2-201ENST00000332473 296 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 RNU6-623P-201ENST00000363143 105 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 RNU6-371P-201ENST00000364283 108 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 RNU4-41P-201ENST00000364426 143 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 RNU6-169P-201ENST00000365336 107 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 Y_RNA.381-201ENST00000365666 102 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.57□□□□□ -2.16
CDX2Q99626 Y_RNA.554-201ENST00000384672 102 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
CDX2Q99626 SNORA40.3-201ENST00000390964 122 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 MIR548F1-201ENST00000408667 84 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 RNA5SP489-201ENST00000410986 109 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
CDX2Q99626 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.57□□□□□ -2.16
CDX2Q99626 RPL31P63-201ENST00000422565 375 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.57□□□□□ -2.16
CDX2Q99626 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC1.57□□□□□ -2.16
CDX2Q99626 AL365400.1-201ENST00000431854 640 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 AL358934.1-201ENST00000432346 324 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.57□□□□□ -2.16
CDX2Q99626 MTND1P4-201ENST00000435196 415 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 AL353689.1-201ENST00000438895 199 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 CALM1P1-201ENST00000442082 433 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.57□□□□□ -2.16
CDX2Q99626 GAPDHP17-201ENST00000449858 1001 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC1.57□□□□□ -2.16
CDX2Q99626 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
CDX2Q99626 SCARNA24.1-201ENST00000516465 137 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.57□□□□□ -2.16
CDX2Q99626 AC109329.1-201ENST00000518744 317 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 AC090572.1-201ENST00000519251 160 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 MIR548AC-201ENST00000585049 88 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.57□□□□□ -2.16
CDX2Q99626 AC068790.2-201ENST00000602601 557 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 NDUFA8P1-201ENST00000605525 367 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 DLEU2_1.1-201ENST00000612089 120 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 DLEU2_1.2-201ENST00000614667 120 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 MIR5739-201ENST00000619803 80 ntBASIC1.57□□□□□ -2.16
CDX2Q99626 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
CDX2Q99626 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
CDX2Q99626 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
CDX2Q99626 RNU6-282P-201ENST00000365357 103 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 RNU6-192P-201ENST00000391253 100 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 CISD1P1-201ENST00000393907 327 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 AL591034.2-201ENST00000402839 359 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 RNU2-39P-201ENST00000410604 198 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 RNU2-63P-201ENST00000410792 194 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 AL663109.1-201ENST00000411498 844 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 HMGN1P14-201ENST00000412459 517 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 EDDM3CP-201ENST00000415977 425 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 CALM2P2-201ENST00000428512 440 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC1.56□□□□□ -2.16
CDX2Q99626 AC119618.1-201ENST00000434191 222 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 AC104850.1-201ENST00000435940 476 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 AL161788.1-201ENST00000441805 169 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC1.56□□□□□ -2.16
CDX2Q99626 MTCYBP1-201ENST00000454315 1119 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 RNA5SP269-201ENST00000459032 137 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC1.56□□□□□ -2.16
CDX2Q99626 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC1.56□□□□□ -2.16
CDX2Q99626 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
CDX2Q99626 RNU1-86P-201ENST00000516108 154 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 RNU6-720P-201ENST00000516363 108 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 RNU1-107P-201ENST00000516617 154 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms