Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 OR1M4P-201ENST00000589199 287 ntBASIC1.71□□□□□ -2.14
SCN2AQ99250 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.71□□□□□ -2.14
SCN2AQ99250 CTHRC1P1-201ENST00000605383 469 ntBASIC1.71□□□□□ -2.14
SCN2AQ99250 AC002044.1-201ENST00000606707 158 ntBASIC1.71□□□□□ -2.14
SCN2AQ99250 AC092807.2-201ENST00000609367 243 ntBASIC1.71□□□□□ -2.14
SCN2AQ99250 MIR3529-201ENST00000637713 78 ntBASIC1.71□□□□□ -2.14
SCN2AQ99250 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
SCN2AQ99250 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
SCN2AQ99250 RNU2-40P-201ENST00000410833 196 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 CYCSP33-201ENST00000414485 327 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.7□□□□□ -2.14
SCN2AQ99250 AL669831.1-202ENST00000428504 417 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 USP9YP14-201ENST00000430663 563 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 UBE2V1P8-201ENST00000437166 265 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 GTF2IP13-201ENST00000438487 386 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
SCN2AQ99250 AL021397.1-201ENST00000451806 248 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 snoU13.14-201ENST00000459372 104 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 RNU6-1208P-201ENST00000459588 107 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 AC091435.1-201ENST00000505442 584 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.7□□□□□ -2.14
SCN2AQ99250 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.7□□□□□ -2.14
SCN2AQ99250 RNU6-567P-201ENST00000516746 107 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 RNA5SP503-201ENST00000517047 117 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 MTND1P35-201ENST00000526739 508 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 OR5AQ1P-201ENST00000527596 927 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 AL512360.1-201ENST00000555346 234 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 MTCO3P23-201ENST00000561363 289 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 MIR4424-201ENST00000585257 86 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 AC023043.2-201ENST00000589678 1026 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 AC021646.1-201ENST00000605469 484 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.7□□□□□ -2.14
SCN2AQ99250 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SCN2AQ99250 RNU6-487P-201ENST00000365430 104 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 SNORA69-201ENST00000383895 132 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 RNU6-321P-201ENST00000410912 106 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 MTCO1P21-201ENST00000416634 589 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 AC097463.2-201ENST00000421074 142 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 MTCO1P20-201ENST00000425366 358 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 AL365400.1-201ENST00000431854 640 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 RPL31P41-201ENST00000477967 372 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.69□□□□□ -2.14
SCN2AQ99250 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.69□□□□□ -2.14
SCN2AQ99250 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.69□□□□□ -2.14
SCN2AQ99250 MIR3941-201ENST00000582572 103 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.69□□□□□ -2.14
SCN2AQ99250 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.69□□□□□ -2.14
SCN2AQ99250 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 MIR1321-201ENST00000637766 79 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.69□□□□□ -2.14
SCN2AQ99250 MTND4P14-201ENST00000435799 1354 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 AL109809.4-201ENST00000603520 2185 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 AL139276.1-201ENST00000311910 1001 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 snoU2_19.1-201ENST00000362361 80 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 RNU4-75P-201ENST00000364621 146 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 Y_RNA.399-201ENST00000383955 105 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 SNORA26.9-201ENST00000391322 122 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 RNU6-1140P-201ENST00000410517 106 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 RNA5SP489-201ENST00000410986 109 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 HMGN2P38-201ENST00000423806 265 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.69□□□□□ -2.14
SCN2AQ99250 AC000111.3-201ENST00000433478 193 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.69□□□□□ -2.14
SCN2AQ99250 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.69□□□□□ -2.14
SCN2AQ99250 AC080013.2-201ENST00000460866 323 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 AC006512.1-201ENST00000468816 291 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 RPL23AP63-201ENST00000498752 471 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 AC104576.1-201ENST00000524225 88 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.69□□□□□ -2.14
SCN2AQ99250 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.69□□□□□ -2.14
SCN2AQ99250 U4.5-201ENST00000617137 123 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 uc_338.34-201ENST00000617467 174 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 AL354950.2-201ENST00000617939 290 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 AC008121.3-201ENST00000618726 433 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 MIR5739-201ENST00000619803 80 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.69□□□□□ -2.14
SCN2AQ99250 AC139792.3-201ENST00000623525 224 ntBASIC1.69□□□□□ -2.14
SCN2AQ99250 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SCN2AQ99250 RNU6-1010P-201ENST00000362757 107 ntBASIC1.68□□□□□ -2.14
SCN2AQ99250 AL355497.1-201ENST00000406262 551 ntBASIC1.68□□□□□ -2.14
SCN2AQ99250 MIR1294-201ENST00000408503 142 ntBASIC1.68□□□□□ -2.14
SCN2AQ99250 RN7SKP101-201ENST00000411376 320 ntBASIC1.68□□□□□ -2.14
SCN2AQ99250 AC016907.1-201ENST00000419483 435 ntBASIC1.68□□□□□ -2.14
SCN2AQ99250 CYCSP49-201ENST00000420810 319 ntBASIC1.68□□□□□ -2.14
SCN2AQ99250 AL353193.1-201ENST00000421444 268 ntBASIC1.68□□□□□ -2.14
SCN2AQ99250 IFNA20P-201ENST00000436840 528 ntBASIC1.68□□□□□ -2.14
SCN2AQ99250 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.68□□□□□ -2.14
SCN2AQ99250 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.68□□□□□ -2.14
SCN2AQ99250 RPS3AP17-201ENST00000472594 777 ntBASIC1.68□□□□□ -2.14
SCN2AQ99250 HMGB3P3-201ENST00000510526 400 ntBASIC1.68□□□□□ -2.14
SCN2AQ99250 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.68□□□□□ -2.14
SCN2AQ99250 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.68□□□□□ -2.14
SCN2AQ99250 AL133241.1-201ENST00000556832 487 ntBASIC1.68□□□□□ -2.14
SCN2AQ99250 AC091152.3-201ENST00000604227 325 ntBASIC1.68□□□□□ -2.14
SCN2AQ99250 AC123912.5-201ENST00000605470 343 ntBASIC1.68□□□□□ -2.14
SCN2AQ99250 AC009233.1-201ENST00000616477 371 ntBASIC1.68□□□□□ -2.14
SCN2AQ99250 SNORD114-19-201ENST00000363072 75 ntBASIC1.67□□□□□ -2.14
SCN2AQ99250 RNU6-527P-201ENST00000363425 104 ntBASIC1.67□□□□□ -2.14
SCN2AQ99250 RNU6-457P-201ENST00000363999 107 ntBASIC1.67□□□□□ -2.14
SCN2AQ99250 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 128.5 ms