Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 FTH1P15-201ENST00000406984 280 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 RNU4-14P-201ENST00000410858 122 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.36□□□□□ -2.03
USP28Q96RU2 AC236972.1-201ENST00000433225 199 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AL359672.1-201ENST00000442302 409 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 IFNA11P-201ENST00000446352 526 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AL031274.1-201ENST00000450334 232 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.36□□□□□ -2.03
USP28Q96RU2 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.36□□□□□ -2.03
USP28Q96RU2 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.36□□□□□ -2.03
USP28Q96RU2 BTF3P15-201ENST00000455606 336 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AMD1P1-201ENST00000457220 922 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.36□□□□□ -2.03
USP28Q96RU2 RNU6-566P-201ENST00000516790 107 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AC087854.1-201ENST00000519706 414 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AC105029.1-201ENST00000520250 669 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.36□□□□□ -2.03
USP28Q96RU2 AC093027.1-201ENST00000546698 429 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AC121758.2-201ENST00000553271 193 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AC007151.1-201ENST00000572774 483 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 RPS3AP23-202ENST00000574601 686 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AC023043.2-201ENST00000589678 1026 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AL117336.2-201ENST00000602435 335 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AC008121.1-201ENST00000603244 268 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AC087045.1-201ENST00000605856 382 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 SNORD14A-201ENST00000606526 91 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.36□□□□□ -2.03
USP28Q96RU2 uc_338.15-201ENST00000615470 191 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 AC063943.3-201ENST00000615562 356 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 RNU6-78P-201ENST00000362897 107 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 Y_RNA.356-201ENST00000365475 113 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 SNORD116-11-201ENST00000383882 92 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 MIR548F5-201ENST00000408421 86 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 SNORA11.4-201ENST00000408823 129 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.35□□□□□ -2.03
USP28Q96RU2 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.35□□□□□ -2.03
USP28Q96RU2 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.35□□□□□ -2.03
USP28Q96RU2 AL365400.1-201ENST00000431854 640 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 MTND4LP16-201ENST00000440828 295 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 AL161651.1-201ENST00000440882 223 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.35□□□□□ -2.03
USP28Q96RU2 MTND1P11-201ENST00000456661 876 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 RNU7-187P-201ENST00000458985 68 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.35□□□□□ -2.03
USP28Q96RU2 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.35□□□□□ -2.03
USP28Q96RU2 RNA5SP454-201ENST00000517231 127 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 AP005902.1-201ENST00000521358 186 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.35□□□□□ -2.03
USP28Q96RU2 AC010186.2-204ENST00000537668 439 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 AC103996.1-201ENST00000555468 102 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 MIR5571-201ENST00000577998 113 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 AL132765.2-201ENST00000610812 351 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 uc_338.5-201ENST00000611839 155 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 AC104985.2-201ENST00000620598 500 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 AC097372.5-201ENST00000623665 376 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.35□□□□□ -2.03
USP28Q96RU2 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
USP28Q96RU2 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
USP28Q96RU2 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.34□□□□□ -2.03
USP28Q96RU2 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
USP28Q96RU2 RNU4-82P-201ENST00000362443 140 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 Y_RNA.263-201ENST00000364659 114 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 RNU6-1280P-201ENST00000365211 107 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 Y_RNA.339-201ENST00000365325 102 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 RNU6-827P-201ENST00000365553 106 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 RNU6-1329P-201ENST00000365664 107 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 Y_RNA.474-201ENST00000384341 102 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 RNU6-95P-201ENST00000384697 107 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 RNU2-41P-201ENST00000410991 178 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 CYCSP48-201ENST00000417124 323 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 AL117339.3-201ENST00000418733 162 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 AC027124.2-201ENST00000428249 105 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 MICF-203ENST00000432679 129 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.34□□□□□ -2.03
USP28Q96RU2 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.34□□□□□ -2.03
USP28Q96RU2 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.34□□□□□ -2.03
USP28Q96RU2 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.34□□□□□ -2.03
USP28Q96RU2 AC116655.1-201ENST00000508324 901 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 RNU6-277P-201ENST00000516272 106 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 SCARNA3-201ENST00000517097 143 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 AC069113.1-201ENST00000517763 267 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 IGKV3-31-201ENST00000523109 329 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.34□□□□□ -2.03
USP28Q96RU2 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.34□□□□□ -2.03
USP28Q96RU2 AC005668.1-201ENST00000571142 476 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 MIR4790-201ENST00000577799 79 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 AC002984.1-201ENST00000591692 448 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 AC243960.4-201ENST00000600532 288 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.34□□□□□ -2.03
USP28Q96RU2 AC009314.1-201ENST00000603871 304 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 AC091152.3-201ENST00000604227 325 ntBASIC2.34□□□□□ -2.03
USP28Q96RU2 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
USP28Q96RU2 MTND5P30-201ENST00000452896 1731 ntBASIC2.34□□□□□ -2.04
USP28Q96RU2 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP28Q96RU2 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP28Q96RU2 AL596028.1-201ENST00000326971 197 ntBASIC2.33□□□□□ -2.04
USP28Q96RU2 RNU6-562P-201ENST00000362731 107 ntBASIC2.33□□□□□ -2.04
USP28Q96RU2 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP28Q96RU2 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms