Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC009233.1-201ENST00000616477 371 ntBASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 RNU7-90P-201ENST00000459216 62 ntBASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 RNU6-1099P-201ENST00000363533 107 ntBASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 OFD1P4Y-201ENST00000455273 1179 ntBASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 AL512310.8-201ENST00000550183 120 ntBASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 AC122134.1-202ENST00000569111 1201 ntBASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 MIR3664-201ENST00000579074 99 ntBASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 AC138207.3-201ENST00000585289 166 ntBASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 AL022345.1-201ENST00000607292 135 ntBASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 AC009268.2-201ENST00000621925 457 ntBASIC-1.02□□□□□ -2.57
VPS13AQ96RL7 RNU6-25P-201ENST00000383873 107 ntBASIC-1.03□□□□□ -2.57
VPS13AQ96RL7 RNU6-925P-201ENST00000384629 104 ntBASIC-1.03□□□□□ -2.57
VPS13AQ96RL7 RNU6-29P-201ENST00000384637 107 ntBASIC-1.03□□□□□ -2.57
VPS13AQ96RL7 RNU6-27P-201ENST00000516146 107 ntBASIC-1.03□□□□□ -2.57
VPS13AQ96RL7 AC022868.1-201ENST00000517767 391 ntBASIC-1.03□□□□□ -2.57
VPS13AQ96RL7 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC-1.03□□□□□ -2.57
VPS13AQ96RL7 SNORA3B-201ENST00000391305 131 ntBASIC-1.03□□□□□ -2.57
VPS13AQ96RL7 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC-1.03□□□□□ -2.57
VPS13AQ96RL7 RPL17P19-201ENST00000489069 552 ntBASIC-1.03□□□□□ -2.57
VPS13AQ96RL7 AC008993.2-201ENST00000631744 806 ntBASIC-1.03□□□□□ -2.57
VPS13AQ96RL7 RNA5SP93-201ENST00000362525 114 ntBASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 MICF-203ENST00000432679 129 ntBASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 AC007215.1-201ENST00000464893 276 ntBASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 RNU1-117P-201ENST00000517041 158 ntBASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 AL356057.1-201ENST00000533798 831 ntBASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 RNU6-1054P-201ENST00000411293 104 ntBASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 RPS24P7-201ENST00000416921 246 ntBASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 AC002429.1-201ENST00000437672 148 ntBASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 ELOCP24-201ENST00000456370 334 ntBASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 AC021231.3-201ENST00000558497 370 ntBASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 RNU4-36P-201ENST00000364294 144 ntBASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 SNORA75.6-201ENST00000391318 127 ntBASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 RNA5SP501-201ENST00000410990 112 ntBASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 AC104689.1-201ENST00000473356 768 ntBASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC-1.04□□□□□ -2.58
VPS13AQ96RL7 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC-1.05□□□□□ -2.58
VPS13AQ96RL7 SNORA77B-201ENST00000578179 125 ntBASIC-1.05□□□□□ -2.58
VPS13AQ96RL7 AP000676.3-201ENST00000623299 569 ntBASIC-1.05□□□□□ -2.58
VPS13AQ96RL7 MIR29B2-201ENST00000385055 81 ntBASIC-1.05□□□□□ -2.58
VPS13AQ96RL7 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC-1.05□□□□□ -2.58
VPS13AQ96RL7 RN7SKP34-201ENST00000516142 244 ntBASIC-1.05□□□□□ -2.58
VPS13AQ96RL7 AC004805.2-201ENST00000605382 482 ntBASIC-1.05□□□□□ -2.58
VPS13AQ96RL7 MIR101-2-201ENST00000362195 79 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 SNX2P2-201ENST00000424553 323 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 RAC1P7-201ENST00000445367 377 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 AC138869.1-201ENST00000568623 124 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 Y_RNA.255-201ENST00000364581 97 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 MIR124-2-201ENST00000385081 109 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 SNORA26.3-201ENST00000391119 136 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 HNRNPDP2-201ENST00000406475 478 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 AL133396.1-201ENST00000432048 687 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 AC092427.1-201ENST00000439177 601 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 AP000403.1-201ENST00000603349 851 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 AC012507.3-201ENST00000603556 477 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 AC011451.2-201ENST00000604303 598 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 AL138963.2-201ENST00000605137 226 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 uc_338.19-201ENST00000616808 99 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 MIR548AD-201ENST00000584780 82 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 MIR6129-201ENST00000616087 109 ntBASIC-1.06□□□□□ -2.58
VPS13AQ96RL7 U8.5-201ENST00000364528 136 ntBASIC-1.07□□□□□ -2.58
VPS13AQ96RL7 MTCO2P34-201ENST00000421994 607 ntBASIC-1.07□□□□□ -2.58
VPS13AQ96RL7 AC104982.1-201ENST00000478775 574 ntBASIC-1.07□□□□□ -2.58
VPS13AQ96RL7 SNORD79.1-201ENST00000516069 84 ntBASIC-1.07□□□□□ -2.58
VPS13AQ96RL7 SNORD115-3-201ENST00000363100 82 ntBASIC-1.07□□□□□ -2.58
VPS13AQ96RL7 SNORD32A-201ENST00000364805 84 ntBASIC-1.07□□□□□ -2.58
VPS13AQ96RL7 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC-1.07□□□□□ -2.58
VPS13AQ96RL7 Y_RNA.446-201ENST00000384178 104 ntBASIC-1.07□□□□□ -2.58
VPS13AQ96RL7 Y_RNA.577-201ENST00000384794 101 ntBASIC-1.07□□□□□ -2.58
VPS13AQ96RL7 MIR514A1-201ENST00000385133 98 ntBASIC-1.07□□□□□ -2.58
VPS13AQ96RL7 AL590002.1-201ENST00000406554 418 ntBASIC-1.07□□□□□ -2.58
VPS13AQ96RL7 HMGN1P13-201ENST00000505795 138 ntBASIC-1.07□□□□□ -2.58
VPS13AQ96RL7 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC-1.07□□□□□ -2.58
VPS13AQ96RL7 AC018755.4-201ENST00000619715 454 ntBASIC-1.07□□□□□ -2.58
VPS13AQ96RL7 AL603839.4-201ENST00000624658 1005 ntBASIC-1.07□□□□□ -2.58
VPS13AQ96RL7 MIR18A-201ENST00000362310 71 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 Y_RNA.432-201ENST00000384087 111 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 AL161935.2-201ENST00000414627 60 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 RNU6-165P-201ENST00000517170 99 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 AP003168.1-201ENST00000530091 307 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 AK6P2-201ENST00000549020 471 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 AC006504.8-201ENST00000621046 635 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 RNU1-76P-201ENST00000362903 159 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 RNU6-529P-201ENST00000363383 104 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 UBE2V1P8-201ENST00000437166 265 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 CECR9-201ENST00000453421 199 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 RNU6-881P-201ENST00000516813 102 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 AP003465.2-201ENST00000602571 373 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 MIR6755-201ENST00000619993 66 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 Y_RNA.361-201ENST00000365515 120 ntBASIC-1.08□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms