Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC018630.3-201ENST00000542637 96 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 AL136363.2-201ENST00000604173 851 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 AP001330.5-201ENST00000607176 411 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
VPS39Q96JC1 U1.36-201ENST00000620684 176 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 U4.7-201ENST00000638126 106 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 AC002543.1-201ENST00000299783 1954 ntBASIC1.95□□□□□ -2.1
VPS39Q96JC1 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.94□□□□□ -2.1
VPS39Q96JC1 RNU6-266P-201ENST00000364225 107 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 RNA5SP126-201ENST00000365092 109 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 RNU4-20P-201ENST00000365601 151 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
VPS39Q96JC1 SNORA69-201ENST00000383895 132 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 AL033519.2-201ENST00000403958 392 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 RAP1BP3-201ENST00000407180 549 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 RNU2-2P-201ENST00000410396 191 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.94□□□□□ -2.1
VPS39Q96JC1 MTCO3P41-201ENST00000414801 328 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 AL445646.1-201ENST00000431784 216 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.94□□□□□ -2.1
VPS39Q96JC1 RPL32P28-201ENST00000443577 397 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 RNU6-261P-201ENST00000459506 102 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 SRRM1P2-201ENST00000464531 1192 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.94□□□□□ -2.1
VPS39Q96JC1 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.94□□□□□ -2.1
VPS39Q96JC1 LRRC34P2-201ENST00000514850 553 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.94□□□□□ -2.1
VPS39Q96JC1 AC245505.1-201ENST00000556398 224 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.94□□□□□ -2.1
VPS39Q96JC1 MIR4713-201ENST00000582691 75 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 MIR4424-201ENST00000585257 86 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 AC078795.2-201ENST00000602835 1252 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 SNRPGP19-201ENST00000603826 189 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 U2.15-201ENST00000611544 191 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 U2.16-201ENST00000613119 191 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 U2.12-201ENST00000613778 191 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 U2.20-201ENST00000613956 192 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 U2.9-201ENST00000615427 191 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 U2.11-201ENST00000616345 191 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 U2.2-201ENST00000616535 191 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 uc_338.34-201ENST00000617467 174 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 U2.3-201ENST00000617785 191 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 U2.19-201ENST00000618602 191 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 RNU2-1-201ENST00000618664 191 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 uc_338.11-201ENST00000619132 160 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 U2.6-201ENST00000619225 191 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 U2.5-201ENST00000619465 191 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 U2.10-201ENST00000620268 191 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 YWHAEP7-203ENST00000622054 312 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 MTND4P14-201ENST00000435799 1354 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 AC092881.1-201ENST00000638218 2733 ntBASIC1.94□□□□□ -2.1
VPS39Q96JC1 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.94□□□□□ -2.1
VPS39Q96JC1 U8.2-201ENST00000363156 134 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 RNU6-527P-201ENST00000363425 104 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 RNU6-944P-201ENST00000364023 107 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
VPS39Q96JC1 SUMO2P12-201ENST00000405924 140 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 AL606923.1-201ENST00000406616 190 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 EIF1AXP1-201ENST00000419267 435 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.93□□□□□ -2.1
VPS39Q96JC1 UBE2V1P4-201ENST00000425374 344 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.93□□□□□ -2.1
VPS39Q96JC1 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.93□□□□□ -2.1
VPS39Q96JC1 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.93□□□□□ -2.1
VPS39Q96JC1 AC007969.2-201ENST00000441891 191 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.93□□□□□ -2.1
VPS39Q96JC1 RNA5SP57-201ENST00000459463 123 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 TRBV12-1-201ENST00000479785 344 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 RPL21P99-201ENST00000480369 423 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 RNU6-835P-201ENST00000516974 104 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 HSPE1P18-201ENST00000517602 280 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.93□□□□□ -2.1
VPS39Q96JC1 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.93□□□□□ -2.1
VPS39Q96JC1 AC023050.3-201ENST00000541142 333 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 GNAI2P1-201ENST00000541815 315 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.93□□□□□ -2.1
VPS39Q96JC1 MTCO3P23-201ENST00000561363 289 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC1.93□□□□□ -2.1
VPS39Q96JC1 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.93□□□□□ -2.1
VPS39Q96JC1 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.93□□□□□ -2.1
VPS39Q96JC1 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.93□□□□□ -2.1
VPS39Q96JC1 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
VPS39Q96JC1 Y_RNA.378-201ENST00000365652 113 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 RNU6-38P-201ENST00000384085 107 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 RNU6-692P-201ENST00000384496 107 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 MIR544A-201ENST00000384855 91 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 RNA5SP219-201ENST00000390940 113 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 SNORA11.2-201ENST00000408318 127 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 POLHP1-201ENST00000411806 470 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 OR9R1P-201ENST00000412200 877 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.92□□□□□ -2.1
VPS39Q96JC1 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.92□□□□□ -2.1
VPS39Q96JC1 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.92□□□□□ -2.1
VPS39Q96JC1 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.92□□□□□ -2.1
VPS39Q96JC1 AL353752.1-201ENST00000454946 260 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 RNU6-333P-201ENST00000459117 107 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 MTCO3P38-201ENST00000468910 766 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
VPS39Q96JC1 MTND4P7-201ENST00000523876 130 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 124.1 ms