Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 AL391987.6-201ENST00000305671 199 ntBASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 SNORD50.1-201ENST00000362987 71 ntBASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 RNA5SP387-201ENST00000364226 106 ntBASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 Y_RNA.352-201ENST00000365439 102 ntBASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 RNU6-933P-201ENST00000384424 107 ntBASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 MTND3P9-201ENST00000429526 346 ntBASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 AC133134.1-201ENST00000466800 359 ntBASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 RN7SL293P-201ENST00000481765 281 ntBASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 RPL23AP49-201ENST00000492925 468 ntBASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 SNORA31.6-201ENST00000516241 130 ntBASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 AC010186.2-204ENST00000537668 439 ntBASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 AC136932.1-201ENST00000574771 208 ntBASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 MIR3529-201ENST00000637713 78 ntBASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 MIR7153-201ENST00000637758 57 ntBASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.46□□□□□ -1.85
CLIP3Q96DZ5 MTND5P9-201ENST00000503854 1755 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 MIR208A-201ENST00000362287 71 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 Y_RNA.27-201ENST00000362540 103 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 SNORD9-201ENST00000362566 104 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 RNA5SP72-201ENST00000364442 117 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 RNU6-187P-201ENST00000384139 106 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 MIR628-201ENST00000385229 95 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 MIR147B-201ENST00000390185 80 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 SNORA11.1-201ENST00000408133 129 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 RPL30P10-201ENST00000488148 337 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 RPS23P5-201ENST00000495419 428 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 RNU6-255P-201ENST00000516957 105 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 DEFB108E-201ENST00000524692 240 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 AC008739.2-201ENST00000597006 317 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 AC009314.1-201ENST00000603871 304 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 HAUS6P2-201ENST00000433254 2404 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 Z75746.1-201ENST00000440243 2080 ntBASIC3.46□□□□□ -1.86
CLIP3Q96DZ5 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 RNU6-428P-201ENST00000362942 107 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 RNU6-527P-201ENST00000363425 104 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 RNA5SP50-201ENST00000363731 107 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 RNU6-105P-201ENST00000363909 104 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 Y_RNA.269-201ENST00000364685 89 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 Y_RNA.270-201ENST00000364693 104 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 Y_RNA.333-201ENST00000365274 102 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 DYNLT3P1-201ENST00000378574 347 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 RNU6-843P-201ENST00000384454 104 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 MIR34B-201ENST00000385076 84 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 RNU6-700P-201ENST00000391043 107 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 MRPL35P1-201ENST00000404272 572 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 AC096920.1-201ENST00000423991 241 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 AL591043.1-201ENST00000432461 424 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 RPS29P31-201ENST00000446147 164 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 AC079354.2-201ENST00000453523 154 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 RPS27P29-201ENST00000463110 252 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 AK3P2-201ENST00000507976 429 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 RNU4-71P-201ENST00000516258 113 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 AC007458.1-201ENST00000542812 373 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 AC103996.1-201ENST00000555468 102 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 MIR4643-201ENST00000577473 78 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 MIR4300-201ENST00000581016 96 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 MIR7851-201ENST00000610611 160 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 AC009318.2-201ENST00000610917 651 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 AC092435.3-201ENST00000565538 3654 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 AP003122.5-201ENST00000527668 3766 ntBASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CLIP3Q96DZ5 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 Y_RNA.16-201ENST00000362421 102 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 Y_RNA.65-201ENST00000362846 100 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 Y_RNA.277-201ENST00000364754 102 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 Y_RNA.464-201ENST00000384282 110 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 MIR521-1-201ENST00000384902 87 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 MIR183-201ENST00000384958 110 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 159 ms