Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC006026.2-201ENST00000457376 180 ntBASIC3.28□□□□□ -1.88
VPS53Q5VIR6 RN7SL499P-201ENST00000481141 276 ntBASIC3.28□□□□□ -1.88
VPS53Q5VIR6 AC114801.2-201ENST00000503825 781 ntBASIC3.28□□□□□ -1.88
VPS53Q5VIR6 SNORA25.10-201ENST00000515926 124 ntBASIC3.28□□□□□ -1.88
VPS53Q5VIR6 RNU6-699P-201ENST00000517081 110 ntBASIC3.28□□□□□ -1.88
VPS53Q5VIR6 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.28□□□□□ -1.88
VPS53Q5VIR6 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS53Q5VIR6 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS53Q5VIR6 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS53Q5VIR6 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS53Q5VIR6 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS53Q5VIR6 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
VPS53Q5VIR6 RNU6-78P-201ENST00000362897 107 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 MIR518D-201ENST00000385014 87 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 RPS29P13-201ENST00000402041 169 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 AL139281.1-201ENST00000422120 335 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 AC008267.5-201ENST00000424928 265 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 RPL23AP50-201ENST00000434149 455 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS53Q5VIR6 HIGD1AP2-201ENST00000446367 280 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 AC133134.1-201ENST00000466800 359 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 AC068781.1-201ENST00000488231 618 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 AK3P2-201ENST00000507976 429 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 RNU6-377P-201ENST00000515965 102 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS53Q5VIR6 AC103996.1-201ENST00000555468 102 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 BNIP3P16-201ENST00000589779 534 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 AC023043.3-201ENST00000593113 385 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 VN1R107P-201ENST00000601784 209 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 AC136443.5-201ENST00000603741 370 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 MIR3976-201ENST00000606807 139 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS53Q5VIR6 MIR8076-201ENST00000611401 83 ntBASIC3.27□□□□□ -1.89
VPS53Q5VIR6 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS53Q5VIR6 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS53Q5VIR6 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS53Q5VIR6 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
VPS53Q5VIR6 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS53Q5VIR6 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS53Q5VIR6 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS53Q5VIR6 Y_RNA.158-201ENST00000363651 101 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 Y_RNA.428-201ENST00000384078 102 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 RNY1P14-201ENST00000384426 108 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 Y_RNA.496-201ENST00000384444 101 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 AL512633.1-201ENST00000399931 655 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 AL513477.1-202ENST00000417061 214 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS53Q5VIR6 BX276092.3-201ENST00000424182 230 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS53Q5VIR6 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS53Q5VIR6 AC099799.1-201ENST00000439809 192 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 Z96811.1-201ENST00000445880 108 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 snoU109.2-201ENST00000459316 135 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS53Q5VIR6 MRPS36P2-201ENST00000512569 299 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 Y_RNA.661-201ENST00000516003 99 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 SNORD116.3-201ENST00000517176 78 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.26□□□□□ -1.89
VPS53Q5VIR6 AP004607.1-201ENST00000524456 203 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.26□□□□□ -1.89
VPS53Q5VIR6 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS53Q5VIR6 MIR4273-201ENST00000582824 84 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS53Q5VIR6 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
VPS53Q5VIR6 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS53Q5VIR6 AP001836.1-201ENST00000604675 523 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 MIR6134-201ENST00000617606 109 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 ADAM3A-203ENST00000461344 2157 ntBASIC3.26□□□□□ -1.89
VPS53Q5VIR6 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
VPS53Q5VIR6 MRPL42P3-201ENST00000401492 326 ntBASIC3.25□□□□□ -1.89
VPS53Q5VIR6 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS53Q5VIR6 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS53Q5VIR6 EIF4EP2-201ENST00000422816 654 ntBASIC3.25□□□□□ -1.89
VPS53Q5VIR6 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS53Q5VIR6 BTF3P15-201ENST00000455606 336 ntBASIC3.25□□□□□ -1.89
VPS53Q5VIR6 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS53Q5VIR6 RPL17P19-201ENST00000489069 552 ntBASIC3.25□□□□□ -1.89
VPS53Q5VIR6 AC022447.4-201ENST00000504053 364 ntBASIC3.25□□□□□ -1.89
VPS53Q5VIR6 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.25□□□□□ -1.89
VPS53Q5VIR6 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
VPS53Q5VIR6 AP005902.1-201ENST00000521358 186 ntBASIC3.25□□□□□ -1.89
VPS53Q5VIR6 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS53Q5VIR6 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS53Q5VIR6 AC008737.2-201ENST00000599446 118 ntBASIC3.25□□□□□ -1.89
VPS53Q5VIR6 AC019159.1-201ENST00000605094 187 ntBASIC3.25□□□□□ -1.89
VPS53Q5VIR6 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.25□□□□□ -1.89
VPS53Q5VIR6 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
VPS53Q5VIR6 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS53Q5VIR6 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS53Q5VIR6 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS53Q5VIR6 RNU6-428P-201ENST00000362942 107 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 Y_RNA.80-201ENST00000362996 102 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 SNORA5B-201ENST00000363786 132 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 Y_RNA.364-201ENST00000365532 101 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 RNU2-52P-201ENST00000410680 190 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 RNA5SP21-201ENST00000410917 96 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 RPL21P2-201ENST00000440049 481 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 AC009296.1-201ENST00000443146 155 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms