Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC023824.2-201ENST00000566185 400 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 MIR4276-201ENST00000584832 70 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 AC068831.7-201ENST00000616954 363 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 U7.8-201ENST00000619968 63 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 SNORA50A-202ENST00000629536 136 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 AC007785.2-201ENST00000598627 1916 ntBASIC3.46□□□□□ -1.86
USP39Q53GS9 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
USP39Q53GS9 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
USP39Q53GS9 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.45□□□□□ -1.86
USP39Q53GS9 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.45□□□□□ -1.86
USP39Q53GS9 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.45□□□□□ -1.86
USP39Q53GS9 RNA5SP374-201ENST00000362939 125 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 RNA5SP240-201ENST00000365355 128 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 RNU6-1074P-201ENST00000383995 104 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 SNORA48.8-201ENST00000391324 134 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 EI24P2-201ENST00000397776 1076 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 U3.39-201ENST00000408569 239 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 Y_RNA.623-201ENST00000411128 95 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 COX6CP10-201ENST00000416832 224 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 AC098831.1-201ENST00000440661 216 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.45□□□□□ -1.86
USP39Q53GS9 RNU7-87P-201ENST00000459343 62 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.45□□□□□ -1.86
USP39Q53GS9 RPL21P13-201ENST00000488305 481 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.45□□□□□ -1.86
USP39Q53GS9 AK3P2-201ENST00000507976 429 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.45□□□□□ -1.86
USP39Q53GS9 MIR2355-201ENST00000517199 87 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.45□□□□□ -1.86
USP39Q53GS9 AC024405.2-202ENST00000532731 184 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 AC005476.1-201ENST00000554427 397 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 MIR5004-201ENST00000579078 107 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 MIR4425-201ENST00000580572 84 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 RPL23AP78-201ENST00000599928 470 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 AC008121.1-201ENST00000603244 268 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 AL713866.2-201ENST00000603579 219 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 AC073657.2-201ENST00000605661 303 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 Y_RNA.772-201ENST00000606692 102 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.45□□□□□ -1.86
USP39Q53GS9 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 MIR6852-201ENST00000621699 66 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC3.45□□□□□ -1.86
USP39Q53GS9 MFSD8-233ENST00000641482 4860 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
USP39Q53GS9 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
USP39Q53GS9 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
USP39Q53GS9 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
USP39Q53GS9 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.45□□□□□ -1.86
USP39Q53GS9 AC068647.1-201ENST00000489539 2265 ntBASIC3.45□□□□□ -1.86
USP39Q53GS9 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.44□□□□□ -1.86
USP39Q53GS9 PWAR6-201ENST00000552334 4618 ntBASIC3.44□□□□□ -1.86
USP39Q53GS9 Z85995.1-201ENST00000415547 335 ntBASIC3.44□□□□□ -1.86
USP39Q53GS9 EIF1P2-201ENST00000428233 350 ntBASIC3.44□□□□□ -1.86
USP39Q53GS9 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.44□□□□□ -1.86
USP39Q53GS9 AL627311.1-201ENST00000431514 115 ntBASIC3.44□□□□□ -1.86
USP39Q53GS9 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
USP39Q53GS9 RPL27AP5-201ENST00000469428 449 ntBASIC3.44□□□□□ -1.86
USP39Q53GS9 ANXA2P1-201ENST00000505539 926 ntBASIC3.44□□□□□ -1.86
USP39Q53GS9 RNU6-861P-201ENST00000516745 106 ntBASIC3.44□□□□□ -1.86
USP39Q53GS9 SNORD59.2-201ENST00000516873 68 ntBASIC3.44□□□□□ -1.86
USP39Q53GS9 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.44□□□□□ -1.86
USP39Q53GS9 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.44□□□□□ -1.86
USP39Q53GS9 LARP7P3-201ENST00000579888 337 ntBASIC3.44□□□□□ -1.86
USP39Q53GS9 AC002545.1-201ENST00000592511 181 ntBASIC3.44□□□□□ -1.86
USP39Q53GS9 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
USP39Q53GS9 ZNF826P-207ENST00000622273 1910 ntBASIC3.44□□□□□ -1.86
USP39Q53GS9 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
USP39Q53GS9 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
USP39Q53GS9 AL359854.1-201ENST00000614203 1594 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
USP39Q53GS9 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.43□□□□□ -1.86
USP39Q53GS9 RNU6-1301P-201ENST00000362724 104 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 RNU6-227P-201ENST00000362865 103 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 Y_RNA.170-201ENST00000363746 110 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 MIR184-201ENST00000384962 84 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 MIR10A-201ENST00000385043 110 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 RNU6-1077P-201ENST00000410506 102 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 RNU4-47P-201ENST00000410876 114 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 COTL1P1-201ENST00000422309 375 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 Z82188.1-201ENST00000436709 154 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.43□□□□□ -1.86
USP39Q53GS9 S100A11P2-201ENST00000467589 312 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 RN7SL594P-201ENST00000470590 287 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.43□□□□□ -1.86
USP39Q53GS9 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.43□□□□□ -1.86
USP39Q53GS9 RNU6-711P-201ENST00000517255 106 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 AC109479.2-201ENST00000517842 174 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.43□□□□□ -1.86
USP39Q53GS9 CASP1P1-201ENST00000526345 212 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 MIR4659A-201ENST00000580269 81 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.43□□□□□ -1.86
USP39Q53GS9 AC060766.3-201ENST00000591442 263 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 AL137843.1-201ENST00000605078 385 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 AC011476.5-201ENST00000615594 130 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 AC022149.2-201ENST00000621061 203 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 AC021753.1-201ENST00000635724 168 ntBASIC3.43□□□□□ -1.86
USP39Q53GS9 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
USP39Q53GS9 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
USP39Q53GS9 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms