| CRY2 | Q49AN0 | AC103996.1-201 | ENST00000555468 | 102 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| CRY2 | Q49AN0 | AL138976.2-201 | ENST00000563989 | 694 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| CRY2 | Q49AN0 | AP005120.1-201 | ENST00000579321 | 352 nt | TSL 3 BASIC | 2.41 | □□□□□ -2.02 | | |
| CRY2 | Q49AN0 | AC091135.1-201 | ENST00000585943 | 307 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| CRY2 | Q49AN0 | BNIP3P16-201 | ENST00000589779 | 534 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| CRY2 | Q49AN0 | AL162413.1-201 | ENST00000603198 | 110 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| CRY2 | Q49AN0 | Y_RNA.40-201 | ENST00000362645 | 93 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | Y_RNA.41-201 | ENST00000362646 | 102 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | SNORA67.1-201 | ENST00000364749 | 141 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | RNU6-483P-201 | ENST00000384088 | 108 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | RPL23AP36-201 | ENST00000413895 | 458 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AL590556.1-201 | ENST00000423231 | 483 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | LINC01707-201 | ENST00000425517 | 627 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AL589823.1-201 | ENST00000429577 | 183 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AL353680.1-201 | ENST00000433788 | 337 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | LINC01650-201 | ENST00000438093 | 602 nt | TSL 2 BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC243964.1-201 | ENST00000441814 | 261 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | MTND3P16-201 | ENST00000452205 | 344 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | RNU7-138P-201 | ENST00000459479 | 64 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC068781.1-201 | ENST00000488231 | 618 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | RPL30P1-201 | ENST00000488676 | 339 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | SNORA48.11-201 | ENST00000517015 | 89 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | COPS8P3-201 | ENST00000526024 | 482 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | IMMP1LP2-201 | ENST00000552954 | 492 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | DISC1FP1-204 | ENST00000563681 | 466 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | MIR3126-201 | ENST00000577443 | 74 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AP001109.1-201 | ENST00000587114 | 279 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | SNRPGP19-201 | ENST00000603826 | 189 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | KTN1-203 | ENST00000395309 | 4021 nt | APPRIS ALT2 TSL 5 BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | LIFR-201 | ENST00000263409 | 10089 nt | APPRIS P1 TSL 1 (best) BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | snoU2_19.1-201 | ENST00000362361 | 80 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | Y_RNA.378-201 | ENST00000365652 | 113 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | MIR95-201 | ENST00000385072 | 81 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AF274854.1-201 | ENST00000413236 | 615 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | TTTY3-201 | ENST00000417334 | 344 nt | TSL 1 (best) BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC003989.2-201 | ENST00000440224 | 169 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | LINC02264-201 | ENST00000442020 | 576 nt | TSL 3 BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC013470.1-201 | ENST00000453438 | 462 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC087884.1-201 | ENST00000469738 | 328 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | MAGI1-AS1-201 | ENST00000472514 | 591 nt | TSL 3 BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | RPL23AP63-201 | ENST00000498752 | 471 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | LINC02064-201 | ENST00000506492 | 470 nt | TSL 5 BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC124290.1-202 | ENST00000523342 | 387 nt | TSL 3 BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC118273.2-201 | ENST00000532092 | 465 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | PSMA4-205 | ENST00000558281 | 773 nt | TSL 3 BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC126323.6-201 | ENST00000561701 | 451 nt | TSL 3 BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | MIR4446-201 | ENST00000578505 | 67 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC012594.1-269 | ENST00000600489 | 628 nt | TSL 5 BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | SNORD14A-201 | ENST00000606526 | 91 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC092954.2-201 | ENST00000609103 | 430 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AL159153.1-201 | ENST00000619688 | 317 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | TTTY3B-201 | ENST00000631331 | 344 nt | TSL 1 (best) BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | SI-201 | ENST00000264382 | 6011 nt | APPRIS P1 TSL 1 (best) BASIC | 2.39 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | NETO1-202 | ENST00000397929 | 1849 nt | TSL 1 (best) BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | TAB2-205 | ENST00000538427 | 4240 nt | APPRIS P1 TSL 5 BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | Y_RNA.164-201 | ENST00000363709 | 102 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | CFHR4-202 | ENST00000367416 | 2178 nt | APPRIS P1 TSL 2 BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | MIR9-3-201 | ENST00000385084 | 90 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | RNU6-780P-201 | ENST00000391030 | 104 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | RNU6-648P-201 | ENST00000410190 | 107 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AL117339.3-201 | ENST00000418733 | 162 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AL358453.1-201 | ENST00000422522 | 250 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AL445685.2-201 | ENST00000422551 | 342 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | MTND3P21-201 | ENST00000433774 | 331 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AL122017.1-201 | ENST00000435858 | 784 nt | TSL 2 BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC092567.1-201 | ENST00000452397 | 251 nt | TSL 3 BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | Y_RNA.654-201 | ENST00000497848 | 106 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC107208.1-201 | ENST00000508265 | 519 nt | TSL 4 BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | LNX1-AS1-203 | ENST00000511989 | 488 nt | TSL 2 BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | RNU6ATAC12P-201 | ENST00000516542 | 115 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | SNORD60.2-201 | ENST00000516883 | 86 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC087854.1-201 | ENST00000519706 | 414 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | RNU6-323P-201 | ENST00000521915 | 107 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC069133.1-201 | ENST00000522857 | 566 nt | TSL 4 BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC090124.2-201 | ENST00000527727 | 563 nt | TSL 4 BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | CYCSP26-201 | ENST00000534107 | 320 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC025043.1-201 | ENST00000558047 | 625 nt | TSL 2 BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | C18orf54-203 | ENST00000578138 | 776 nt | TSL 3 BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | VN1R107P-201 | ENST00000601784 | 209 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AL357078.3-201 | ENST00000607528 | 618 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AF250324.2-201 | ENST00000608299 | 610 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AL137847.3-201 | ENST00000611521 | 109 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC103705.1-201 | ENST00000619013 | 241 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | FO624990.1-201 | ENST00000636373 | 85 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | CALCRL-201 | ENST00000392370 | 5155 nt | APPRIS P1 TSL 1 (best) BASIC | 2.38 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | CYSLTR1-203 | ENST00000614798 | 2681 nt | APPRIS P1 TSL 1 (best) BASIC | 2.37 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | LINC01938-201 | ENST00000521341 | 1864 nt | TSL 2 BASIC | 2.37 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | RNU6-692P-201 | ENST00000384496 | 107 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | MIR29B2-201 | ENST00000385055 | 81 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | RNU6-1068P-201 | ENST00000410958 | 103 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | USP9YP27-201 | ENST00000418455 | 438 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | RPS15AP10-201 | ENST00000432472 | 382 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AL512271.1-201 | ENST00000439878 | 434 nt | TSL 3 BASIC | 2.37 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC005154.1-208 | ENST00000440438 | 353 nt | TSL 5 BASIC | 2.37 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | HYDIN2-201 | ENST00000493714 | 554 nt | TSL 4 BASIC | 2.37 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC108729.3-201 | ENST00000513484 | 108 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | RNU6-1053P-201 | ENST00000515930 | 101 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC011611.2-201 | ENST00000549888 | 358 nt | TSL 3 BASIC | 2.37 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AL118558.2-201 | ENST00000556294 | 238 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| CRY2 | Q49AN0 | AC007598.1-202 | ENST00000561528 | 435 nt | TSL 3 BASIC | 2.37 | □□□□□ -2.03 | | |