Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC138869.1-201ENST00000568623 124 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 MIR5094-201ENST00000578766 85 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 VN1R83P-201ENST00000595685 445 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC022432.1-201ENST00000595739 310 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC133794.1-201ENST00000602731 914 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AL133445.2-201ENST00000611191 527 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC073349.3-201ENST00000617616 186 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AP000484.1-201ENST00000620067 1252 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC104985.3-201ENST00000623479 597 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC099654.9-201ENST00000637055 678 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC106858.1-201ENST00000637497 429 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 U8.7-201ENST00000364940 136 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 SNORD31B-201ENST00000364977 69 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RNU6-546P-201ENST00000383991 107 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC127391.1-201ENST00000411737 98 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 MTND1P21-201ENST00000412991 285 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC063976.4-201ENST00000421971 163 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC005345.1-201ENST00000431868 217 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RPL23AP50-201ENST00000434149 455 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC0.07□□□□□ -2.4
COL7A1Q02388 FABP5P14-201ENST00000437273 393 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC092427.1-201ENST00000439177 601 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC245047.7-201ENST00000440265 293 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RNFT1P2-201ENST00000443064 757 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC0.07□□□□□ -2.4
COL7A1Q02388 ELOCP30-201ENST00000447108 299 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC020550.1-201ENST00000447385 163 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AP001324.2-201ENST00000461163 319 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AL049714.1-201ENST00000466686 347 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RPS26P45-201ENST00000471748 340 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC097473.1-201ENST00000508142 408 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC116655.1-201ENST00000508324 901 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 SCARNA21.1-201ENST00000515996 128 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 SNORD116-28-201ENST00000516123 91 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RNU6-1282P-201ENST00000516735 96 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC022616.2-201ENST00000523185 300 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC021451.1-201ENST00000523498 1129 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC124293.1-201ENST00000530034 493 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC136619.2-201ENST00000563361 631 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC0.07□□□□□ -2.4
COL7A1Q02388 MIR3136-201ENST00000583498 78 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AL592221.1-201ENST00000605266 382 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 LARP7P1-201ENST00000605576 316 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC092106.3-201ENST00000611308 722 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
COL7A1Q02388 PART1_2.1-201ENST00000612397 250 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC090517.2-201ENST00000614966 680 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.07□□□□□ -2.4
COL7A1Q02388 RMST_10.1-201ENST00000616309 154 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RMST_4.1-201ENST00000616886 107 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 5S_rRNA.11-201ENST00000618635 84 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC017037.3-201ENST00000625016 472 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.07□□□□□ -2.4
COL7A1Q02388 RNU6-78P-201ENST00000362897 107 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RNU6-778P-201ENST00000363269 103 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RNU6-650P-201ENST00000365658 111 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC083799.1-201ENST00000366451 910 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 MIR635-201ENST00000384830 98 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RNU2-39P-201ENST00000410604 198 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RNU2-8P-201ENST00000410727 190 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RNU4-22P-201ENST00000411058 166 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.07□□□□□ -2.4
COL7A1Q02388 MRPS18CP6-201ENST00000423587 223 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 MTND4P20-201ENST00000424125 869 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 PSMA6P3-201ENST00000428242 164 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 LARP1BP3-201ENST00000437229 869 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AL135790.2-201ENST00000437701 267 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RPS15AP9-201ENST00000439856 381 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC012308.1-201ENST00000451232 178 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 MTCO3P10-201ENST00000455912 772 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 snoU13.14-201ENST00000459372 104 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AL160314.1-201ENST00000490836 438 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 TRBVA-201ENST00000498804 316 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC105758.1-201ENST00000506038 399 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC0.07□□□□□ -2.4
COL7A1Q02388 DEFB131C-201ENST00000528817 165 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC016256.1-201ENST00000547971 354 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC103996.1-201ENST00000555468 102 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AL136520.1-202ENST00000555494 763 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AL157871.3-201ENST00000557231 293 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC126365.2-201ENST00000580630 379 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 MIR4764-201ENST00000580680 88 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC008088.1-201ENST00000580993 280 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC0.07□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms