Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
RNF4P78317 XIST_intron.1-201ENST00000619444 68 ntBASIC3.67□□□□□ -1.82
RNF4P78317 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
RNF4P78317 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.67□□□□□ -1.82
RNF4P78317 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
RNF4P78317 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
RNF4P78317 MAPK10-253ENST00000641010 4072 ntBASIC3.66□□□□□ -1.82
RNF4P78317 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
RNF4P78317 AL157777.2-201ENST00000258070 137 ntBASIC3.66□□□□□ -1.82
RNF4P78317 Y_RNA.101-201ENST00000363154 102 ntBASIC3.66□□□□□ -1.82
RNF4P78317 Y_RNA.136-201ENST00000363444 102 ntBASIC3.66□□□□□ -1.82
RNF4P78317 RNA5SP322-201ENST00000363617 119 ntBASIC3.66□□□□□ -1.82
RNF4P78317 RNU6-213P-201ENST00000384051 104 ntBASIC3.66□□□□□ -1.82
RNF4P78317 Y_RNA.464-201ENST00000384282 110 ntBASIC3.66□□□□□ -1.82
RNF4P78317 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.66□□□□□ -1.82
RNF4P78317 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.66□□□□□ -1.82
RNF4P78317 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.66□□□□□ -1.82
RNF4P78317 COX6CP14-201ENST00000469580 174 ntBASIC3.66□□□□□ -1.82
RNF4P78317 RN7SL132P-201ENST00000478131 296 ntBASIC3.66□□□□□ -1.82
RNF4P78317 AC103975.1-201ENST00000482506 483 ntBASIC3.66□□□□□ -1.82
RNF4P78317 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC3.66□□□□□ -1.82
RNF4P78317 AC026402.1-201ENST00000513642 170 ntBASIC3.66□□□□□ -1.82
RNF4P78317 SNORA27.4-201ENST00000516650 95 ntBASIC3.66□□□□□ -1.82
RNF4P78317 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC3.66□□□□□ -1.82
RNF4P78317 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.66□□□□□ -1.82
RNF4P78317 RN7SL703P-201ENST00000578485 302 ntBASIC3.66□□□□□ -1.82
RNF4P78317 MIR3133-201ENST00000583157 78 ntBASIC3.66□□□□□ -1.82
RNF4P78317 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.66□□□□□ -1.82
RNF4P78317 AC068831.7-201ENST00000616954 363 ntBASIC3.66□□□□□ -1.82
RNF4P78317 U7.8-201ENST00000619968 63 ntBASIC3.66□□□□□ -1.82
RNF4P78317 AC091932.3-201ENST00000624223 323 ntBASIC3.66□□□□□ -1.82
RNF4P78317 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.66□□□□□ -1.82
RNF4P78317 AC073073.2-201ENST00000609827 2578 ntBASIC3.66□□□□□ -1.82
RNF4P78317 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.66□□□□□ -1.82
RNF4P78317 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.66□□□□□ -1.82
RNF4P78317 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
RNF4P78317 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
RNF4P78317 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.66□□□□□ -1.82
RNF4P78317 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.65□□□□□ -1.82
RNF4P78317 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.65□□□□□ -1.82
RNF4P78317 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
RNF4P78317 Y_RNA.40-201ENST00000362645 93 ntBASIC3.65□□□□□ -1.83
RNF4P78317 RNU4-56P-201ENST00000364700 142 ntBASIC3.65□□□□□ -1.83
RNF4P78317 RNU6-923P-201ENST00000364753 107 ntBASIC3.65□□□□□ -1.83
RNF4P78317 RNU6-746P-201ENST00000384112 109 ntBASIC3.65□□□□□ -1.83
RNF4P78317 Y_RNA.498-201ENST00000384460 102 ntBASIC3.65□□□□□ -1.83
RNF4P78317 SNORA19-201ENST00000384737 128 ntBASIC3.65□□□□□ -1.83
RNF4P78317 CBX3P9-201ENST00000402326 552 ntBASIC3.65□□□□□ -1.83
RNF4P78317 RNA5SP38-201ENST00000410750 119 ntBASIC3.65□□□□□ -1.83
RNF4P78317 AC083863.1-201ENST00000438811 231 ntBASIC3.65□□□□□ -1.83
RNF4P78317 IFNA11P-201ENST00000446352 526 ntBASIC3.65□□□□□ -1.83
RNF4P78317 Y_RNA.638-201ENST00000459374 113 ntBASIC3.65□□□□□ -1.83
RNF4P78317 AC007215.1-201ENST00000464893 276 ntBASIC3.65□□□□□ -1.83
RNF4P78317 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.65□□□□□ -1.83
RNF4P78317 GNRHR2P1-201ENST00000555315 631 ntBASIC3.65□□□□□ -1.83
RNF4P78317 AC106785.1-201ENST00000565935 262 ntBASIC3.65□□□□□ -1.83
RNF4P78317 MIR3136-201ENST00000583498 78 ntBASIC3.65□□□□□ -1.83
RNF4P78317 MIR4282-201ENST00000583613 67 ntBASIC3.65□□□□□ -1.83
RNF4P78317 RPS15AP11-201ENST00000594193 385 ntBASIC3.65□□□□□ -1.83
RNF4P78317 AL034555.1-201ENST00000604816 211 ntBASIC3.65□□□□□ -1.83
RNF4P78317 AL591424.2-201ENST00000617023 128 ntBASIC3.65□□□□□ -1.83
RNF4P78317 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.65□□□□□ -1.83
RNF4P78317 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.65□□□□□ -1.83
RNF4P78317 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
RNF4P78317 AC091152.2-201ENST00000591628 2569 ntBASIC3.64□□□□□ -1.83
RNF4P78317 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.64□□□□□ -1.83
RNF4P78317 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.64□□□□□ -1.83
RNF4P78317 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
RNF4P78317 UBE2WP1-201ENST00000362030 340 ntBASIC3.64□□□□□ -1.83
RNF4P78317 Y_RNA.82-201ENST00000363000 102 ntBASIC3.64□□□□□ -1.83
RNF4P78317 Y_RNA.92-201ENST00000363043 102 ntBASIC3.64□□□□□ -1.83
RNF4P78317 RNU4-80P-201ENST00000363200 141 ntBASIC3.64□□□□□ -1.83
RNF4P78317 RNA5SP197-201ENST00000363357 119 ntBASIC3.64□□□□□ -1.83
RNF4P78317 RNU6-529P-201ENST00000363383 104 ntBASIC3.64□□□□□ -1.83
RNF4P78317 RNU5F-3P-201ENST00000363767 117 ntBASIC3.64□□□□□ -1.83
RNF4P78317 Y_RNA.235-201ENST00000364412 102 ntBASIC3.64□□□□□ -1.83
RNF4P78317 RNA5SP97-201ENST00000365006 84 ntBASIC3.64□□□□□ -1.83
RNF4P78317 Y_RNA.306-201ENST00000365015 102 ntBASIC3.64□□□□□ -1.83
RNF4P78317 Y_RNA.312-201ENST00000365089 102 ntBASIC3.64□□□□□ -1.83
RNF4P78317 Y_RNA.322-201ENST00000365151 102 ntBASIC3.64□□□□□ -1.83
RNF4P78317 RNU6-748P-201ENST00000384648 107 ntBASIC3.64□□□□□ -1.83
RNF4P78317 MIR147B-201ENST00000390185 80 ntBASIC3.64□□□□□ -1.83
RNF4P78317 RN7SKP51-201ENST00000410781 304 ntBASIC3.64□□□□□ -1.83
RNF4P78317 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.64□□□□□ -1.83
RNF4P78317 RPS29P7-201ENST00000439662 171 ntBASIC3.64□□□□□ -1.83
RNF4P78317 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.64□□□□□ -1.83
RNF4P78317 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.64□□□□□ -1.83
RNF4P78317 Y_RNA.650-201ENST00000459002 102 ntBASIC3.64□□□□□ -1.83
RNF4P78317 AC109925.1-201ENST00000478069 331 ntBASIC3.64□□□□□ -1.83
RNF4P78317 RNY3P16-201ENST00000516338 101 ntBASIC3.64□□□□□ -1.83
RNF4P78317 SNORD19.2-201ENST00000516978 73 ntBASIC3.64□□□□□ -1.83
RNF4P78317 Y_RNA.777-201ENST00000516982 102 ntBASIC3.64□□□□□ -1.83
RNF4P78317 RNU6-789P-201ENST00000517105 102 ntBASIC3.64□□□□□ -1.83
RNF4P78317 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.64□□□□□ -1.83
RNF4P78317 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.64□□□□□ -1.83
RNF4P78317 Y_RNA.771-201ENST00000598668 102 ntBASIC3.64□□□□□ -1.83
RNF4P78317 AC005828.6-201ENST00000606610 232 ntBASIC3.64□□□□□ -1.83
RNF4P78317 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.64□□□□□ -1.83
RNF4P78317 Y_RNA.789-201ENST00000622480 102 ntBASIC3.64□□□□□ -1.83
RNF4P78317 BX322639.1-202ENST00000423987 2213 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms