Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 MIR5697-201ENST00000578045 78 ntBASIC-1.19□□□□□ -2.6
RPL39P62891 SNORA25.18-201ENST00000607153 114 ntBASIC-1.19□□□□□ -2.6
RPL39P62891 AC004908.3-201ENST00000610248 625 ntBASIC-1.19□□□□□ -2.6
RPL39P62891 MIR7111-201ENST00000619751 72 ntBASIC-1.19□□□□□ -2.6
RPL39P62891 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC-1.19□□□□□ -2.6
RPL39P62891 AC080188.3-201ENST00000624842 748 ntBASIC-1.19□□□□□ -2.6
RPL39P62891 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC-1.19□□□□□ -2.6
RPL39P62891 Y_RNA.362-201ENST00000365518 110 ntBASIC-1.2□□□□□ -2.6
RPL39P62891 RNU6-741P-201ENST00000383889 107 ntBASIC-1.2□□□□□ -2.6
RPL39P62891 RNU6-730P-201ENST00000383954 104 ntBASIC-1.2□□□□□ -2.6
RPL39P62891 RNU6-244P-201ENST00000391028 104 ntBASIC-1.2□□□□□ -2.6
RPL39P62891 SNORA75.6-201ENST00000391318 127 ntBASIC-1.2□□□□□ -2.6
RPL39P62891 RNU4-46P-201ENST00000410818 138 ntBASIC-1.2□□□□□ -2.6
RPL39P62891 USP9YP19-201ENST00000412165 485 ntBASIC-1.2□□□□□ -2.6
RPL39P62891 AC093259.1-201ENST00000509755 300 ntBASIC-1.2□□□□□ -2.6
RPL39P62891 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC-1.2□□□□□ -2.6
RPL39P62891 MTND4LP26-201ENST00000518144 282 ntBASIC-1.2□□□□□ -2.6
RPL39P62891 AP002360.4-201ENST00000606980 481 ntBASIC-1.2□□□□□ -2.6
RPL39P62891 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC-1.2□□□□□ -2.6
RPL39P62891 Y_RNA.30-201ENST00000362572 97 ntBASIC-1.21□□□□□ -2.6
RPL39P62891 SNORA63D-201ENST00000364359 132 ntBASIC-1.21□□□□□ -2.6
RPL39P62891 RNU4-63P-201ENST00000411313 118 ntBASIC-1.21□□□□□ -2.6
RPL39P62891 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC-1.21□□□□□ -2.6
RPL39P62891 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC-1.21□□□□□ -2.6
RPL39P62891 MTCYBP40-201ENST00000509390 1135 ntBASIC-1.21□□□□□ -2.6
RPL39P62891 AC022616.3-201ENST00000523940 148 ntBASIC-1.21□□□□□ -2.6
RPL39P62891 GHRLOS.1-201ENST00000610995 70 ntBASIC-1.21□□□□□ -2.6
RPL39P62891 RMST_4.1-201ENST00000616886 107 ntBASIC-1.21□□□□□ -2.6
RPL39P62891 MIR4788-201ENST00000639104 80 ntBASIC-1.21□□□□□ -2.6
RPL39P62891 MTND4P8-201ENST00000514997 1362 ntBASIC-1.21□□□□□ -2.6
RPL39P62891 RNU6-925P-201ENST00000384629 104 ntBASIC-1.22□□□□□ -2.6
RPL39P62891 RNY1P7-201ENST00000384743 110 ntBASIC-1.22□□□□□ -2.6
RPL39P62891 RNU6-1176P-201ENST00000390955 107 ntBASIC-1.22□□□□□ -2.6
RPL39P62891 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC-1.22□□□□□ -2.6
RPL39P62891 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC-1.22□□□□□ -2.6
RPL39P62891 ZNF736P6Y-201ENST00000447526 1213 ntBASIC-1.22□□□□□ -2.6
RPL39P62891 RPL31P53-201ENST00000457065 348 ntBASIC-1.22□□□□□ -2.6
RPL39P62891 AC112771.1-201ENST00000463581 102 ntBASIC-1.22□□□□□ -2.6
RPL39P62891 AC022868.1-201ENST00000517767 391 ntBASIC-1.22□□□□□ -2.6
RPL39P62891 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC-1.22□□□□□ -2.6
RPL39P62891 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC-1.22□□□□□ -2.6
RPL39P62891 BNIP3P6-201ENST00000549284 499 ntBASIC-1.22□□□□□ -2.6
RPL39P62891 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-1.22□□□□□ -2.6
RPL39P62891 Y_RNA.251-201ENST00000364551 99 ntBASIC-1.23□□□□□ -2.61
RPL39P62891 MIR573-201ENST00000384964 99 ntBASIC-1.23□□□□□ -2.61
RPL39P62891 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC-1.23□□□□□ -2.61
RPL39P62891 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC-1.23□□□□□ -2.61
RPL39P62891 AL034345.1-201ENST00000407768 123 ntBASIC-1.23□□□□□ -2.61
RPL39P62891 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-1.23□□□□□ -2.61
RPL39P62891 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC-1.23□□□□□ -2.61
RPL39P62891 RPL26P6-201ENST00000440913 438 ntBASIC-1.23□□□□□ -2.61
RPL39P62891 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC-1.23□□□□□ -2.61
RPL39P62891 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC-1.23□□□□□ -2.61
RPL39P62891 AC074198.2-201ENST00000508153 258 ntBASIC-1.23□□□□□ -2.61
RPL39P62891 AC027338.1-201ENST00000514840 825 ntBASIC-1.23□□□□□ -2.61
RPL39P62891 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC-1.23□□□□□ -2.61
RPL39P62891 MDM2-233ENST00000545204 398 ntTSL 5 BASIC-1.23□□□□□ -2.61
RPL39P62891 AL451064.1-201ENST00000607718 471 ntBASIC-1.23□□□□□ -2.61
RPL39P62891 AL163051.2-201ENST00000618976 735 ntBASIC-1.23□□□□□ -2.61
RPL39P62891 AC120349.3-201ENST00000624377 529 ntBASIC-1.23□□□□□ -2.61
RPL39P62891 SNORD114-6-201ENST00000364393 72 ntBASIC-1.24□□□□□ -2.61
RPL39P62891 AL133475.1-201ENST00000404414 305 ntBASIC-1.24□□□□□ -2.61
RPL39P62891 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC-1.24□□□□□ -2.61
RPL39P62891 RNFT1P2-201ENST00000443064 757 ntBASIC-1.24□□□□□ -2.61
RPL39P62891 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC-1.24□□□□□ -2.61
RPL39P62891 AC097473.1-201ENST00000508142 408 ntBASIC-1.24□□□□□ -2.61
RPL39P62891 AC079140.3-201ENST00000511111 550 ntBASIC-1.24□□□□□ -2.61
RPL39P62891 MTND5P13-201ENST00000513046 1079 ntBASIC-1.24□□□□□ -2.61
RPL39P62891 RNU6-1096P-201ENST00000517089 102 ntBASIC-1.24□□□□□ -2.61
RPL39P62891 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC-1.24□□□□□ -2.61
RPL39P62891 MIR4432-201ENST00000581823 84 ntBASIC-1.24□□□□□ -2.61
RPL39P62891 AC010615.3-201ENST00000597319 394 ntBASIC-1.24□□□□□ -2.61
RPL39P62891 AC004853.1-201ENST00000604902 698 ntBASIC-1.24□□□□□ -2.61
RPL39P62891 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC-1.24□□□□□ -2.61
RPL39P62891 ZNF736P9Y-201ENST00000439586 1345 ntBASIC-1.24□□□□□ -2.61
RPL39P62891 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC-1.25□□□□□ -2.61
RPL39P62891 RNU6-697P-201ENST00000363348 107 ntBASIC-1.25□□□□□ -2.61
RPL39P62891 AL136310.1-201ENST00000404926 654 ntBASIC-1.25□□□□□ -2.61
RPL39P62891 Z95118.1-201ENST00000421372 247 ntBASIC-1.25□□□□□ -2.61
RPL39P62891 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC-1.25□□□□□ -2.61
RPL39P62891 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC-1.25□□□□□ -2.61
RPL39P62891 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC-1.25□□□□□ -2.61
RPL39P62891 MTND1P15-201ENST00000579262 949 ntBASIC-1.25□□□□□ -2.61
RPL39P62891 AC131055.1-201ENST00000584626 316 ntBASIC-1.25□□□□□ -2.61
RPL39P62891 RNU6-87P-201ENST00000607561 108 ntBASIC-1.25□□□□□ -2.61
RPL39P62891 RMST_5.1-201ENST00000618704 126 ntBASIC-1.25□□□□□ -2.61
RPL39P62891 MTND4P12-201ENST00000498999 1377 ntBASIC-1.25□□□□□ -2.61
RPL39P62891 Y_RNA.40-201ENST00000362645 93 ntBASIC-1.26□□□□□ -2.61
RPL39P62891 MIR7-2-201ENST00000384970 110 ntBASIC-1.26□□□□□ -2.61
RPL39P62891 RNU2-59P-201ENST00000410482 191 ntBASIC-1.26□□□□□ -2.61
RPL39P62891 RNU6-575P-201ENST00000411326 105 ntBASIC-1.26□□□□□ -2.61
RPL39P62891 BTF3P11-201ENST00000426582 477 ntBASIC-1.26□□□□□ -2.61
RPL39P62891 RPS20P24-201ENST00000457473 361 ntBASIC-1.26□□□□□ -2.61
RPL39P62891 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC-1.26□□□□□ -2.61
RPL39P62891 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC-1.26□□□□□ -2.61
RPL39P62891 AC074133.1-201ENST00000515696 183 ntBASIC-1.26□□□□□ -2.61
RPL39P62891 AC022616.2-201ENST00000523185 300 ntBASIC-1.26□□□□□ -2.61
RPL39P62891 IGKV1-22-201ENST00000524313 326 ntBASIC-1.26□□□□□ -2.61
RPL39P62891 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC-1.26□□□□□ -2.61
RPL39P62891 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC-1.26□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms