Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MTND2P18-201ENST00000419962 1030 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC1.19□□□□□ -2.22
FOXA1P55317 AL669831.1-202ENST00000428504 417 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.19□□□□□ -2.22
FOXA1P55317 AL591043.1-201ENST00000432461 424 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 GTF2IP13-201ENST00000438487 386 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 AL445567.1-201ENST00000439121 144 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 AC079448.1-201ENST00000449377 373 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 SNORD42A-201ENST00000459584 64 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 MTND2P33-201ENST00000506452 1031 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 SNORD27.1-201ENST00000516319 72 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC1.19□□□□□ -2.22
FOXA1P55317 AP005660.1-201ENST00000522972 293 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.19□□□□□ -2.22
FOXA1P55317 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.19□□□□□ -2.22
FOXA1P55317 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.19□□□□□ -2.22
FOXA1P55317 MIR4775-201ENST00000581168 75 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 SEPT7P9-203ENST00000604116 343 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 AC064872.1-201ENST00000604823 1072 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.19□□□□□ -2.22
FOXA1P55317 U4.7-201ENST00000638126 106 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.19□□□□□ -2.22
FOXA1P55317 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.18□□□□□ -2.22
FOXA1P55317 FGF7P2-201ENST00000332473 296 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-37P-201ENST00000362692 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-1097P-201ENST00000363586 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-105P-201ENST00000363909 104 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-11P-201ENST00000364234 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-1164P-201ENST00000364428 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 Y_RNA.324-201ENST00000365165 102 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-25P-201ENST00000383873 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-1-201ENST00000383898 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-1029P-201ENST00000384109 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-48P-201ENST00000384161 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-36P-201ENST00000384172 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-4P-201ENST00000384205 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-5P-201ENST00000384238 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-3P-201ENST00000384314 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-16P-201ENST00000384385 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-15P-201ENST00000384534 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-2-201ENST00000384627 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-29P-201ENST00000384637 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-9-201ENST00000384776 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-33P-201ENST00000384793 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNA5SP465-201ENST00000391195 109 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 SNORA26.8-201ENST00000391306 124 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 BTF3L4P2-201ENST00000392798 346 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.18□□□□□ -2.22
FOXA1P55317 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC1.18□□□□□ -2.22
FOXA1P55317 BX295541.1-201ENST00000417774 250 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
FOXA1P55317 MTND2P29-201ENST00000438595 412 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC1.18□□□□□ -2.22
FOXA1P55317 KATNBL1P3-201ENST00000443475 909 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.18□□□□□ -2.22
FOXA1P55317 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC1.18□□□□□ -2.22
FOXA1P55317 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC1.18□□□□□ -2.22
FOXA1P55317 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC1.18□□□□□ -2.22
FOXA1P55317 SNRPGP9-201ENST00000456025 225 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RPS29P15-201ENST00000458329 171 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU7-182P-201ENST00000459009 62 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.18□□□□□ -2.22
FOXA1P55317 AC009646.1-201ENST00000510455 318 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 SNORA18.6-201ENST00000516792 115 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNA5SP503-201ENST00000517047 117 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.18□□□□□ -2.22
FOXA1P55317 AC084364.2-201ENST00000546924 395 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 AC012414.6-201ENST00000568241 401 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 MIR3198-2-201ENST00000577868 80 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 MIR4421-201ENST00000578133 69 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 Z84480.1-201ENST00000605131 311 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 RNU6-6P-201ENST00000606623 107 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 AC099842.1-201ENST00000619919 596 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 MIR1248-201ENST00000629190 106 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
FOXA1P55317 AC245060.5-201ENST00000610778 3293 ntBASIC1.18□□□□□ -2.22
FOXA1P55317 MIR126-201ENST00000362291 85 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 RNU6-282P-201ENST00000365357 103 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC1.17□□□□□ -2.22
FOXA1P55317 RNU6-1222P-201ENST00000384615 107 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 RNY3P10-201ENST00000384764 102 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 MIR597-201ENST00000384968 97 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 RNU6-248P-201ENST00000410720 107 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC1.17□□□□□ -2.22
FOXA1P55317 AC004965.1-201ENST00000413033 213 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 SRIP3-201ENST00000413200 219 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC1.17□□□□□ -2.22
FOXA1P55317 AL596276.1-201ENST00000434465 418 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.17□□□□□ -2.22
FOXA1P55317 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.17□□□□□ -2.22
FOXA1P55317 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.17□□□□□ -2.22
FOXA1P55317 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC1.17□□□□□ -2.22
FOXA1P55317 RNU5F-2P-201ENST00000516066 82 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 AL590229.1-201ENST00000603497 542 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 AC245014.2-201ENST00000603689 287 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 AC246785.4-201ENST00000605374 287 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 AL161722.3-201ENST00000605789 2983 ntBASIC1.17□□□□□ -2.22
FOXA1P55317 AL022345.1-201ENST00000607292 135 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 1434.8 ms