Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AL353752.1-201ENST00000454946 260 ntBASIC2.68□□□□□ -1.98
HOXC11O43248 AC069439.1-201ENST00000494739 167 ntBASIC2.68□□□□□ -1.98
HOXC11O43248 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXC11O43248 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXC11O43248 RNU6-273P-201ENST00000516937 96 ntBASIC2.68□□□□□ -1.98
HOXC11O43248 AP000889.2-201ENST00000532684 490 ntBASIC2.68□□□□□ -1.98
HOXC11O43248 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXC11O43248 MIR3945-201ENST00000581853 98 ntBASIC2.68□□□□□ -1.98
HOXC11O43248 MIR4635-201ENST00000583759 79 ntBASIC2.68□□□□□ -1.98
HOXC11O43248 MIR3672-201ENST00000584290 82 ntBASIC2.68□□□□□ -1.98
HOXC11O43248 AL034555.1-201ENST00000604816 211 ntBASIC2.68□□□□□ -1.98
HOXC11O43248 AL138726.1-201ENST00000614873 333 ntBASIC2.68□□□□□ -1.98
HOXC11O43248 AL136221.1-201ENST00000621449 509 ntBASIC2.68□□□□□ -1.98
HOXC11O43248 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXC11O43248 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXC11O43248 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXC11O43248 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.68□□□□□ -1.98
HOXC11O43248 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXC11O43248 RNU6-790P-201ENST00000384479 105 ntBASIC2.67□□□□□ -1.98
HOXC11O43248 MIR521-1-201ENST00000384902 87 ntBASIC2.67□□□□□ -1.98
HOXC11O43248 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXC11O43248 GPM6BP3-201ENST00000442797 145 ntBASIC2.67□□□□□ -1.98
HOXC11O43248 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXC11O43248 AC104564.1-201ENST00000493028 407 ntBASIC2.67□□□□□ -1.98
HOXC11O43248 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.67□□□□□ -1.98
HOXC11O43248 AC018710.1-201ENST00000506509 158 ntBASIC2.67□□□□□ -1.98
HOXC11O43248 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXC11O43248 AC243972.3-201ENST00000539655 198 ntBASIC2.67□□□□□ -1.98
HOXC11O43248 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXC11O43248 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXC11O43248 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXC11O43248 AL049779.4-201ENST00000604500 156 ntBASIC2.67□□□□□ -1.98
HOXC11O43248 AC068944.2-201ENST00000610373 403 ntBASIC2.67□□□□□ -1.98
HOXC11O43248 AC104237.2-201ENST00000612456 443 ntBASIC2.67□□□□□ -1.98
HOXC11O43248 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HOXC11O43248 RNU6-831P-201ENST00000384548 107 ntBASIC2.66□□□□□ -1.98
HOXC11O43248 RNU6-1274P-201ENST00000384557 107 ntBASIC2.66□□□□□ -1.98
HOXC11O43248 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
HOXC11O43248 EIF1AXP1-201ENST00000419267 435 ntBASIC2.66□□□□□ -1.98
HOXC11O43248 MTND1P2-201ENST00000430604 821 ntBASIC2.66□□□□□ -1.98
HOXC11O43248 AC011816.1-201ENST00000441346 546 ntBASIC2.66□□□□□ -1.98
HOXC11O43248 RPL31P58-201ENST00000469001 379 ntBASIC2.66□□□□□ -1.98
HOXC11O43248 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXC11O43248 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXC11O43248 RNU6-864P-201ENST00000516256 108 ntBASIC2.66□□□□□ -1.98
HOXC11O43248 RNU6-567P-201ENST00000516746 107 ntBASIC2.66□□□□□ -1.98
HOXC11O43248 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXC11O43248 AC021231.3-201ENST00000558497 370 ntBASIC2.66□□□□□ -1.98
HOXC11O43248 AC011712.1-201ENST00000588959 234 ntBASIC2.66□□□□□ -1.98
HOXC11O43248 AC023043.2-201ENST00000589678 1026 ntBASIC2.66□□□□□ -1.98
HOXC11O43248 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXC11O43248 AC018889.1-201ENST00000605372 397 ntBASIC2.66□□□□□ -1.98
HOXC11O43248 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.66□□□□□ -1.98
HOXC11O43248 MIR203B-201ENST00000636080 86 ntBASIC2.66□□□□□ -1.98
HOXC11O43248 AC069528.2-201ENST00000624849 1991 ntBASIC2.66□□□□□ -1.98
HOXC11O43248 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HOXC11O43248 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HOXC11O43248 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
HOXC11O43248 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
HOXC11O43248 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.98
HOXC11O43248 Y_RNA.212-201ENST00000364177 102 ntBASIC2.65□□□□□ -1.99
HOXC11O43248 RNU1-91P-201ENST00000364746 163 ntBASIC2.65□□□□□ -1.99
HOXC11O43248 SNORD116-11-201ENST00000383882 92 ntBASIC2.65□□□□□ -1.99
HOXC11O43248 RNU1-52P-201ENST00000384190 164 ntBASIC2.65□□□□□ -1.99
HOXC11O43248 MIR27B-201ENST00000385129 97 ntBASIC2.65□□□□□ -1.99
HOXC11O43248 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.65□□□□□ -1.99
HOXC11O43248 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXC11O43248 AC011753.1-201ENST00000451001 220 ntBASIC2.65□□□□□ -1.99
HOXC11O43248 PCMTD1P1-201ENST00000455560 355 ntBASIC2.65□□□□□ -1.99
HOXC11O43248 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.65□□□□□ -1.99
HOXC11O43248 RNU4-49P-201ENST00000516080 140 ntBASIC2.65□□□□□ -1.99
HOXC11O43248 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.65□□□□□ -1.99
HOXC11O43248 MIR3923-201ENST00000579521 83 ntBASIC2.65□□□□□ -1.99
HOXC11O43248 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.65□□□□□ -1.99
HOXC11O43248 MIR3942-201ENST00000585264 109 ntBASIC2.65□□□□□ -1.99
HOXC11O43248 AL356575.1-201ENST00000603008 283 ntBASIC2.65□□□□□ -1.99
HOXC11O43248 AC009248.2-201ENST00000619826 254 ntBASIC2.65□□□□□ -1.99
HOXC11O43248 AC010297.1-201ENST00000623948 149 ntBASIC2.65□□□□□ -1.99
HOXC11O43248 CTSLP2-204ENST00000629029 392 ntBASIC2.65□□□□□ -1.99
HOXC11O43248 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
HOXC11O43248 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
HOXC11O43248 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
HOXC11O43248 Y_RNA.72-201ENST00000362894 103 ntBASIC2.64□□□□□ -1.99
HOXC11O43248 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
HOXC11O43248 AL356776.1-201ENST00000406574 447 ntBASIC2.64□□□□□ -1.99
HOXC11O43248 RNA5SP508-201ENST00000411327 119 ntBASIC2.64□□□□□ -1.99
HOXC11O43248 USP9YP28-201ENST00000435142 589 ntBASIC2.64□□□□□ -1.99
HOXC11O43248 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.64□□□□□ -1.99
HOXC11O43248 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.64□□□□□ -1.99
HOXC11O43248 RNU7-187P-201ENST00000458985 68 ntBASIC2.64□□□□□ -1.99
HOXC11O43248 AC130509.1-201ENST00000464158 433 ntBASIC2.64□□□□□ -1.99
HOXC11O43248 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXC11O43248 AC091874.1-201ENST00000511402 339 ntBASIC2.64□□□□□ -1.99
HOXC11O43248 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXC11O43248 RNA5SP320-201ENST00000516263 124 ntBASIC2.64□□□□□ -1.99
HOXC11O43248 AC107953.1-201ENST00000522216 297 ntBASIC2.64□□□□□ -1.99
HOXC11O43248 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.64□□□□□ -1.99
HOXC11O43248 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.64□□□□□ -1.99
HOXC11O43248 AC091544.4-201ENST00000555268 342 ntBASIC2.64□□□□□ -1.99
HOXC11O43248 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 125.4 ms