Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RNU6-298P-201ENST00000390888 96 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 RPS3AP1-201ENST00000413190 320 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 RPS26P5-201ENST00000418544 335 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.48□□□□□ -2.33
HMGB3O15347 AC244505.5-201ENST00000443639 207 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 AC007395.1-201ENST00000451333 677 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.48□□□□□ -2.33
HMGB3O15347 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC0.48□□□□□ -2.33
HMGB3O15347 SNORA31.2-201ENST00000516019 134 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 RNU2-10P-201ENST00000516375 211 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 AL590705.4-201ENST00000532209 134 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC0.48□□□□□ -2.33
HMGB3O15347 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC0.48□□□□□ -2.33
HMGB3O15347 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.48□□□□□ -2.33
HMGB3O15347 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.48□□□□□ -2.33
HMGB3O15347 MIR4742-201ENST00000581069 85 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 AC068620.3-201ENST00000602749 560 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC0.48□□□□□ -2.33
HMGB3O15347 AL353149.1-201ENST00000610667 244 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 AC092106.3-201ENST00000611308 722 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 AL512506.1-201ENST00000613918 449 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 AL512427.1-201ENST00000618593 349 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 AL353997.5-201ENST00000618886 171 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 SNORD98-201ENST00000636377 67 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 AC018630.2-201ENST00000534866 2403 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 AL442644.1-201ENST00000454390 3105 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 MTND4P16-201ENST00000466108 1367 ntBASIC0.47□□□□□ -2.33
HMGB3O15347 RNU6-534P-201ENST00000364877 106 ntBASIC0.47□□□□□ -2.33
HMGB3O15347 Y_RNA.327-201ENST00000365201 102 ntBASIC0.47□□□□□ -2.33
HMGB3O15347 SNORA18.2-201ENST00000383865 132 ntBASIC0.47□□□□□ -2.33
HMGB3O15347 RPS3AP37-201ENST00000419176 745 ntBASIC0.47□□□□□ -2.33
HMGB3O15347 AC092473.1-201ENST00000441098 221 ntBASIC0.47□□□□□ -2.33
HMGB3O15347 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.47□□□□□ -2.33
HMGB3O15347 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC0.47□□□□□ -2.33
HMGB3O15347 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC0.47□□□□□ -2.33
HMGB3O15347 COX6CP6-201ENST00000490840 228 ntBASIC0.47□□□□□ -2.33
HMGB3O15347 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.47□□□□□ -2.33
HMGB3O15347 SNORD79.1-201ENST00000516069 84 ntBASIC0.47□□□□□ -2.33
HMGB3O15347 LRRC6P1-201ENST00000532188 885 ntBASIC0.47□□□□□ -2.33
HMGB3O15347 AC008752.3-201ENST00000588113 712 ntBASIC0.47□□□□□ -2.33
HMGB3O15347 BNIP3P16-201ENST00000589779 534 ntBASIC0.47□□□□□ -2.33
HMGB3O15347 DEFB131E-202ENST00000602581 683 ntBASIC0.47□□□□□ -2.33
HMGB3O15347 AC072039.2-201ENST00000608883 439 ntBASIC0.47□□□□□ -2.33
HMGB3O15347 AC008147.4-201ENST00000617570 1204 ntBASIC0.47□□□□□ -2.33
HMGB3O15347 AL391994.1-201ENST00000254724 282 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 RNU6-1080P-201ENST00000383982 107 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 5S_rRNA.2-201ENST00000391293 112 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 RPL17P50-201ENST00000396131 546 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 RNA5SP201-201ENST00000410316 124 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC0.46□□□□□ -2.34
HMGB3O15347 AL157398.1-201ENST00000452981 186 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.46□□□□□ -2.34
HMGB3O15347 RNU6-1041P-201ENST00000516254 102 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 AC023050.2-201ENST00000544968 387 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 AC025423.5-201ENST00000550230 219 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 AC109446.1-201ENST00000566172 220 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 SNORA59B-202ENST00000578183 701 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 AC110760.3-201ENST00000598794 467 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 AC012507.3-201ENST00000603556 477 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 CTHRC1P1-201ENST00000605383 469 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 AC091965.4-201ENST00000607691 587 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 AC108747.1-201ENST00000609508 535 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 AC126177.8-201ENST00000618339 1015 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC0.46□□□□□ -2.34
HMGB3O15347 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC0.46□□□□□ -2.34
HMGB3O15347 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
HMGB3O15347 AC023934.1-201ENST00000574529 2389 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 RNA5SP99-201ENST00000364020 114 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 RNU6-110P-201ENST00000384508 104 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 MIR508-201ENST00000384857 115 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 MIR520E-201ENST00000384867 87 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.45□□□□□ -2.34
HMGB3O15347 AC019070.1-201ENST00000415008 1024 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.45□□□□□ -2.34
HMGB3O15347 AL121890.1-201ENST00000435457 205 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 MTND5P2-201ENST00000442927 1142 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 AL360271.2-201ENST00000447710 161 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.45□□□□□ -2.34
HMGB3O15347 AC048334.1-201ENST00000477975 159 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 AC108210.2-201ENST00000503681 201 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 RNU1-86P-201ENST00000516108 154 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 RNU1-107P-201ENST00000516617 154 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 RNU6-113P-201ENST00000516653 101 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 RN7SKP219-201ENST00000516825 296 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 RNU6-856P-201ENST00000516959 98 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 SUMO2P16-201ENST00000519475 264 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC0.45□□□□□ -2.34
HMGB3O15347 MTND2P7-201ENST00000521337 640 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 AC011604.1-201ENST00000545978 196 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 AC090888.2-201ENST00000559765 1144 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.45□□□□□ -2.34
HMGB3O15347 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.45□□□□□ -2.34
HMGB3O15347 HMGN1P30-201ENST00000589286 268 ntBASIC0.45□□□□□ -2.34
HMGB3O15347 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC0.44□□□□□ -2.34
HMGB3O15347 SNORD18A-201ENST00000363753 72 ntBASIC0.44□□□□□ -2.34
HMGB3O15347 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC0.44□□□□□ -2.34
HMGB3O15347 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC0.44□□□□□ -2.34
HMGB3O15347 MTCO3P18-201ENST00000440206 761 ntBASIC0.44□□□□□ -2.34
HMGB3O15347 BTBD7P2-201ENST00000441962 620 ntBASIC0.44□□□□□ -2.34
HMGB3O15347 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.44□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms