Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
USP3Q9Y6I4 RNU4-11P-201ENST00000365287 132 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 RNA5SP167-201ENST00000365461 116 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 RNU6-748P-201ENST00000384648 107 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 MTND4LP9-201ENST00000427694 174 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.31□□□□□ -1.72
USP3Q9Y6I4 AL161651.1-201ENST00000440882 223 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
USP3Q9Y6I4 AL441985.1-201ENST00000457727 251 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 U8.19-201ENST00000459095 133 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 RN7SL585P-201ENST00000470538 280 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 AC006517.1-201ENST00000480485 328 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 AC103975.1-201ENST00000482506 483 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 AC025554.1-201ENST00000505641 188 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC4.31□□□□□ -1.72
USP3Q9Y6I4 AC022616.8-201ENST00000533569 253 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.31□□□□□ -1.72
USP3Q9Y6I4 AC090616.3-201ENST00000582184 217 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 AC005255.1-201ENST00000593748 216 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 AL391903.3-201ENST00000612158 163 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 Y_RNA.802-201ENST00000614892 130 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 AC134026.1-201ENST00000623249 2239 ntBASIC4.31□□□□□ -1.72
USP3Q9Y6I4 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
USP3Q9Y6I4 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.31□□□□□ -1.72
USP3Q9Y6I4 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP3Q9Y6I4 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP3Q9Y6I4 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
USP3Q9Y6I4 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.3□□□□□ -1.72
USP3Q9Y6I4 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
USP3Q9Y6I4 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
USP3Q9Y6I4 MIR372-201ENST00000362225 67 ntBASIC4.3□□□□□ -1.72
USP3Q9Y6I4 RNU6-199P-201ENST00000362954 107 ntBASIC4.3□□□□□ -1.72
USP3Q9Y6I4 RNU6-801P-201ENST00000364087 105 ntBASIC4.3□□□□□ -1.72
USP3Q9Y6I4 SNORA72.4-201ENST00000384174 132 ntBASIC4.3□□□□□ -1.72
USP3Q9Y6I4 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
USP3Q9Y6I4 RNU5F-2P-201ENST00000516066 82 ntBASIC4.3□□□□□ -1.72
USP3Q9Y6I4 RNU6-1333P-201ENST00000516162 93 ntBASIC4.3□□□□□ -1.72
USP3Q9Y6I4 RNU6-107P-201ENST00000516643 102 ntBASIC4.3□□□□□ -1.72
USP3Q9Y6I4 RNU7-143P-201ENST00000516781 65 ntBASIC4.3□□□□□ -1.72
USP3Q9Y6I4 MIR2116-201ENST00000517221 80 ntBASIC4.3□□□□□ -1.72
USP3Q9Y6I4 MIR3690-201ENST00000580266 75 ntBASIC4.3□□□□□ -1.72
USP3Q9Y6I4 MIR5684-201ENST00000585074 65 ntBASIC4.3□□□□□ -1.72
USP3Q9Y6I4 TCL6_2.1-201ENST00000615162 119 ntBASIC4.3□□□□□ -1.72
USP3Q9Y6I4 TUG1_4.1-201ENST00000619464 181 ntBASIC4.3□□□□□ -1.72
USP3Q9Y6I4 AC068205.3-201ENST00000636385 468 ntBASIC4.3□□□□□ -1.72
USP3Q9Y6I4 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
USP3Q9Y6I4 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USP3Q9Y6I4 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.3□□□□□ -1.72
USP3Q9Y6I4 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USP3Q9Y6I4 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.3□□□□□ -1.72
USP3Q9Y6I4 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
USP3Q9Y6I4 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.29□□□□□ -1.72
USP3Q9Y6I4 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.29□□□□□ -1.72
USP3Q9Y6I4 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.29□□□□□ -1.72
USP3Q9Y6I4 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP3Q9Y6I4 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP3Q9Y6I4 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.29□□□□□ -1.72
USP3Q9Y6I4 SPRR2C-201ENST00000290702 219 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
USP3Q9Y6I4 SNORA60-201ENST00000362396 134 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 SNORD115-30-201ENST00000364117 82 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 RNU6-454P-201ENST00000364292 107 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 Y_RNA.415-201ENST00000384012 112 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 MIR616-201ENST00000385293 97 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 MIR526A2-201ENST00000390198 65 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 AL031003.1-201ENST00000404229 172 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 PTGES3P4-201ENST00000426243 356 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 AL365496.1-201ENST00000426885 215 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.29□□□□□ -1.72
USP3Q9Y6I4 RPL31P41-201ENST00000477967 372 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 RPS29P20-201ENST00000489592 171 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 RNU6-928P-201ENST00000516876 104 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.29□□□□□ -1.72
USP3Q9Y6I4 SNX18P1Y-201ENST00000616231 511 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 AC005562.2-201ENST00000618264 111 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP3Q9Y6I4 AC011266.1-201ENST00000624119 3569 ntBASIC4.29□□□□□ -1.72
USP3Q9Y6I4 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
USP3Q9Y6I4 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 MAPK10-253ENST00000641010 4072 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 RNA5SP388-201ENST00000362584 119 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 RNU6-1010P-201ENST00000362757 107 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 RNA5SP513-201ENST00000364648 118 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 Y_RNA.368-201ENST00000365547 113 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 RNA5SP201-201ENST00000410316 124 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 AL035461.1-201ENST00000421490 332 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 AL117339.2-201ENST00000430475 180 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 AL714022.1-201ENST00000439897 151 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 AL353748.1-201ENST00000440753 474 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 Z75741.1-201ENST00000446793 314 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 snoU13.14-201ENST00000459372 104 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms