Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 SNORA25.10-201ENST00000515926 124 ntBASIC3.22□□□□□ -1.89
SSX2IPQ9Y2D8 SNORA43.2-201ENST00000516652 128 ntBASIC3.22□□□□□ -1.89
SSX2IPQ9Y2D8 RNU6-612P-201ENST00000516909 102 ntBASIC3.22□□□□□ -1.89
SSX2IPQ9Y2D8 SNORD116.3-201ENST00000517176 78 ntBASIC3.22□□□□□ -1.89
SSX2IPQ9Y2D8 SUB1P3-201ENST00000564581 315 ntBASIC3.22□□□□□ -1.89
SSX2IPQ9Y2D8 BNIP3P16-201ENST00000589779 534 ntBASIC3.22□□□□□ -1.89
SSX2IPQ9Y2D8 AC116312.1-201ENST00000606841 314 ntBASIC3.22□□□□□ -1.89
SSX2IPQ9Y2D8 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
SSX2IPQ9Y2D8 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 SNORA14A-201ENST00000364773 135 ntBASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 RNU6-336P-201ENST00000364891 107 ntBASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 RNU6-1032P-201ENST00000384100 107 ntBASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 MCFD2P1-201ENST00000417812 300 ntBASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 EIF4EP2-201ENST00000422816 654 ntBASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 AL139132.1-201ENST00000431587 344 ntBASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 AC099799.1-201ENST00000439809 192 ntBASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 RPL17P19-201ENST00000489069 552 ntBASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 SCGB1D5P-201ENST00000515134 247 ntBASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 AL391261.3-201ENST00000557194 520 ntBASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SSX2IPQ9Y2D8 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 Y_RNA.148-201ENST00000363557 117 ntBASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 AC008267.5-201ENST00000424928 265 ntBASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 RN7SL499P-201ENST00000481141 276 ntBASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 AC022447.4-201ENST00000504053 364 ntBASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 RNA5SP356-201ENST00000515972 94 ntBASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 GTF3AP2-201ENST00000557014 266 ntBASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 AC091925.1-201ENST00000623204 462 ntBASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 AL355596.1-201ENST00000565399 3996 ntBASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.2□□□□□ -1.9
SSX2IPQ9Y2D8 CDC27P3-201ENST00000635418 1910 ntBASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 AC110491.1-201ENST00000562191 2010 ntBASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 RNU6-942P-201ENST00000363002 107 ntBASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 RNU6-527P-201ENST00000363425 104 ntBASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 RNU6-105P-201ENST00000363909 104 ntBASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 RNU1-115P-201ENST00000365329 160 ntBASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 BPY2DP-201ENST00000422208 265 ntBASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 snoU13.28-201ENST00000459235 104 ntBASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 AC117440.1-201ENST00000474107 571 ntBASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 RPL23AP49-201ENST00000492925 468 ntBASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 RNU6-120P-201ENST00000516077 103 ntBASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 CBX3P8-201ENST00000532412 525 ntBASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 MIR3162-201ENST00000581818 82 ntBASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 MTND4LP5-201ENST00000605152 292 ntBASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 AC006157.1-201ENST00000611750 366 ntBASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
SSX2IPQ9Y2D8 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 RNU6-227P-201ENST00000362865 103 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 RNY1P16-201ENST00000363063 111 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 Y_RNA.158-201ENST00000363651 101 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 RNU1-100P-201ENST00000365255 165 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 RNY1P14-201ENST00000384426 108 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 Y_RNA.577-201ENST00000384794 101 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 MRPL42P3-201ENST00000401492 326 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 RNA5SP492-201ENST00000411330 114 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 MTND3P9-201ENST00000429526 346 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 AL591043.1-201ENST00000432461 424 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 HMGN2P10-201ENST00000448085 265 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 FO393415.2-201ENST00000480085 343 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 RPS29P20-201ENST00000489592 171 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 AC091826.1-201ENST00000514065 313 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 SNORA31.18-201ENST00000517043 134 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 MIR4672-201ENST00000583126 81 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 AC008737.2-201ENST00000599446 118 ntBASIC3.18□□□□□ -1.9
SSX2IPQ9Y2D8 MTND5P9-201ENST00000503854 1755 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms