Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC003982.1-202ENST00000469928 248 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 RPS26P21-201ENST00000475397 348 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 FO393415.2-201ENST00000480085 343 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 SCGB1D5P-201ENST00000515134 247 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 SNORD116.3-201ENST00000517176 78 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 AP000889.1-201ENST00000530968 660 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 CBX3P8-201ENST00000532412 525 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 DNAJC8P1-201ENST00000554535 372 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 AC010653.1-201ENST00000571108 881 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 MIR3605-201ENST00000583214 100 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 AC096772.1-201ENST00000609146 564 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 MTND5P1-201ENST00000445440 1375 ntBASIC3.34□□□□□ -1.88
LIMCH1Q9UPQ0 AC092435.3-201ENST00000565538 3654 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 SNORD50.1-201ENST00000362987 71 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 Y_RNA.123-201ENST00000363338 102 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 RNU6-595P-201ENST00000363944 107 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 RNA5SP139-201ENST00000364340 117 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 Y_RNA.333-201ENST00000365274 102 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 SNORA70.4-201ENST00000365509 134 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 RNU6-692P-201ENST00000384496 107 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 RNU6-1222P-201ENST00000384615 107 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 Y_RNA.577-201ENST00000384794 101 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 SNORA48.5-201ENST00000391143 135 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 RNU1-101P-201ENST00000391171 127 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 PMCHL1-202ENST00000423102 261 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 AC103975.1-201ENST00000482506 483 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 AP001025.1-201ENST00000486139 332 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 SNORA9.3-201ENST00000516383 129 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 RNU6-699P-201ENST00000517081 110 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 AC016256.1-201ENST00000547971 354 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 AC090897.2-201ENST00000581715 130 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 PART1_1.1-201ENST00000611761 217 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 RBBP8P1-201ENST00000449447 1844 ntBASIC3.33□□□□□ -1.88
LIMCH1Q9UPQ0 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 AC000403.1-201ENST00000613696 3585 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 AC091564.4-201ENST00000533934 2194 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 MIR422A-201ENST00000362286 90 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 Y_RNA.162-201ENST00000363683 102 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 RNU6-1141P-201ENST00000364520 107 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 RNU1-115P-201ENST00000365329 160 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 RNU6-142P-201ENST00000384019 107 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 RNU6-622P-201ENST00000384272 103 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 Y_RNA.533-201ENST00000384596 114 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 MIR544A-201ENST00000384855 91 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 MTCYBP2-201ENST00000407745 171 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 RPL23AP95-201ENST00000426806 265 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 AL513124.1-201ENST00000450410 614 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 AC079354.2-201ENST00000453523 154 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 RN7SKP210-201ENST00000459176 261 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 snoU13.22-201ENST00000459428 104 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 GZMAP1-201ENST00000503054 631 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 AC083906.5-201ENST00000503722 328 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 RN7SKP282-201ENST00000516824 299 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 AC006504.6-201ENST00000590142 199 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 AC012493.2-201ENST00000595083 291 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 AC005014.2-201ENST00000607795 599 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 HMGB1P24-202ENST00000615653 685 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 AC007792.1-201ENST00000623023 402 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 MIR3651-201ENST00000630427 90 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 AC002543.1-201ENST00000299783 1954 ntBASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.32□□□□□ -1.88
LIMCH1Q9UPQ0 RNU6-700P-201ENST00000391043 107 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 AC008267.5-201ENST00000424928 265 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 OSTCP8-201ENST00000445117 448 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 AL031659.1-201ENST00000447075 539 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 RPL30P10-201ENST00000488148 337 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 Y_RNA.661-201ENST00000516003 99 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 SCARNA13-201ENST00000516672 275 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 RN7SKP295-201ENST00000517264 153 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 AC105137.2-201ENST00000569073 466 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 AC023043.3-201ENST00000593113 385 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 AL158827.2-201ENST00000602494 330 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 AL355877.2-201ENST00000603670 358 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 AC007179.3-201ENST00000604976 235 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 uc_338.14-201ENST00000613162 166 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 AC083806.3-201ENST00000614016 455 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 AC091925.1-201ENST00000623204 462 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms