Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS4AQ9UN37 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VPS4AQ9UN37 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS4AQ9UN37 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS4AQ9UN37 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
VPS4AQ9UN37 AC093831.2-201ENST00000624393 3427 ntBASIC2.97□□□□□ -1.93
VPS4AQ9UN37 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.97□□□□□ -1.93
VPS4AQ9UN37 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS4AQ9UN37 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS4AQ9UN37 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS4AQ9UN37 RPL23AP95-201ENST00000426806 265 ntBASIC2.97□□□□□ -1.93
VPS4AQ9UN37 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS4AQ9UN37 RPS12P18-201ENST00000442381 270 ntBASIC2.97□□□□□ -1.93
VPS4AQ9UN37 AL031659.1-201ENST00000447075 539 ntBASIC2.97□□□□□ -1.93
VPS4AQ9UN37 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS4AQ9UN37 RN7SL75P-201ENST00000461926 281 ntBASIC2.97□□□□□ -1.93
VPS4AQ9UN37 AC022447.4-201ENST00000504053 364 ntBASIC2.97□□□□□ -1.93
VPS4AQ9UN37 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS4AQ9UN37 RNU5B-3P-201ENST00000516601 115 ntBASIC2.97□□□□□ -1.93
VPS4AQ9UN37 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS4AQ9UN37 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.97□□□□□ -1.93
VPS4AQ9UN37 AL391813.1-201ENST00000603098 260 ntBASIC2.97□□□□□ -1.93
VPS4AQ9UN37 AL356157.2-201ENST00000605122 111 ntBASIC2.97□□□□□ -1.93
VPS4AQ9UN37 AC009318.2-201ENST00000610917 651 ntBASIC2.97□□□□□ -1.93
VPS4AQ9UN37 MIR3529-201ENST00000637713 78 ntBASIC2.97□□□□□ -1.93
VPS4AQ9UN37 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS4AQ9UN37 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
VPS4AQ9UN37 AP003122.5-201ENST00000527668 3766 ntBASIC2.97□□□□□ -1.93
VPS4AQ9UN37 AC010889.1-201ENST00000566193 2666 ntBASIC2.96□□□□□ -1.93
VPS4AQ9UN37 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.96□□□□□ -1.93
VPS4AQ9UN37 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
VPS4AQ9UN37 Y_RNA.31-201ENST00000362574 102 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 RNU6-490P-201ENST00000362985 107 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 RNU6-527P-201ENST00000363425 104 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 SNORA63-201ENST00000363450 132 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 SNORD32A-201ENST00000364805 84 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 RNA5SP390-201ENST00000410191 113 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS4AQ9UN37 OOSP1P1-201ENST00000423265 274 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 AL591043.1-201ENST00000432461 424 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.96□□□□□ -1.94
VPS4AQ9UN37 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS4AQ9UN37 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS4AQ9UN37 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS4AQ9UN37 RPL23AP49-201ENST00000492925 468 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.96□□□□□ -1.94
VPS4AQ9UN37 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS4AQ9UN37 AC025281.1-201ENST00000567026 265 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 MIR5701-3-201ENST00000578890 82 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 MIR4435-1-201ENST00000582552 80 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 MIR5701-1-201ENST00000585138 82 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 AC005014.2-201ENST00000607795 599 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 MIR5701-2-201ENST00000615634 82 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 AC018692.3-201ENST00000623929 123 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS4AQ9UN37 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
VPS4AQ9UN37 AC000403.1-201ENST00000613696 3585 ntBASIC2.96□□□□□ -1.94
VPS4AQ9UN37 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.95□□□□□ -1.94
VPS4AQ9UN37 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
VPS4AQ9UN37 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
VPS4AQ9UN37 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.95□□□□□ -1.94
VPS4AQ9UN37 Y_RNA.445-201ENST00000384168 102 ntBASIC2.95□□□□□ -1.94
VPS4AQ9UN37 RNU6-692P-201ENST00000384496 107 ntBASIC2.95□□□□□ -1.94
VPS4AQ9UN37 RNU6-748P-201ENST00000384648 107 ntBASIC2.95□□□□□ -1.94
VPS4AQ9UN37 RNA5SP274-201ENST00000410484 108 ntBASIC2.95□□□□□ -1.94
VPS4AQ9UN37 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS4AQ9UN37 PTGES3P4-201ENST00000426243 356 ntBASIC2.95□□□□□ -1.94
VPS4AQ9UN37 MTND3P9-201ENST00000429526 346 ntBASIC2.95□□□□□ -1.94
VPS4AQ9UN37 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS4AQ9UN37 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS4AQ9UN37 RPS29P12-201ENST00000460178 152 ntBASIC2.95□□□□□ -1.94
VPS4AQ9UN37 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS4AQ9UN37 AL163540.1-201ENST00000485382 386 ntBASIC2.95□□□□□ -1.94
VPS4AQ9UN37 AC090096.1-201ENST00000489168 390 ntBASIC2.95□□□□□ -1.94
VPS4AQ9UN37 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS4AQ9UN37 CBX3P8-201ENST00000532412 525 ntBASIC2.95□□□□□ -1.94
VPS4AQ9UN37 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS4AQ9UN37 MIR3945-201ENST00000581853 98 ntBASIC2.95□□□□□ -1.94
VPS4AQ9UN37 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS4AQ9UN37 AL158827.2-201ENST00000602494 330 ntBASIC2.95□□□□□ -1.94
VPS4AQ9UN37 AL691447.3-201ENST00000635020 330 ntBASIC2.95□□□□□ -1.94
VPS4AQ9UN37 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.95□□□□□ -1.94
VPS4AQ9UN37 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.95□□□□□ -1.94
VPS4AQ9UN37 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.94□□□□□ -1.94
VPS4AQ9UN37 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
VPS4AQ9UN37 Y_RNA.216-201ENST00000364205 93 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 Y_RNA.496-201ENST00000384444 101 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 MIR521-1-201ENST00000384902 87 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 AL590004.1-201ENST00000405321 300 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 RNU2-49P-201ENST00000410666 184 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.94□□□□□ -1.94
VPS4AQ9UN37 AC004383.1-201ENST00000438135 289 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 MIR2053-201ENST00000459295 91 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.94□□□□□ -1.94
VPS4AQ9UN37 FO393415.2-201ENST00000480085 343 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.94□□□□□ -1.94
VPS4AQ9UN37 AC022493.2-201ENST00000506122 481 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 RNU6-120P-201ENST00000516077 103 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 RN7SKP43-201ENST00000516173 320 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 AC009812.2-201ENST00000517657 457 ntBASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 140.9 ms