| HCN3 | Q9P1Z3 | Y_RNA.184-201 | ENST00000363884 | 108 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | SNORD32A-201 | ENST00000364805 | 84 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | SNORD81.2-201 | ENST00000365153 | 76 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RNU6-1032P-201 | ENST00000384100 | 107 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RPL21P75-201 | ENST00000396599 | 483 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RPL21P28-201 | ENST00000401418 | 483 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RNU2-25P-201 | ENST00000411041 | 191 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RAB6C-AS1-202 | ENST00000433431 | 123 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC105272.1-201 | ENST00000438604 | 198 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | HMGB1P18-201 | ENST00000438801 | 619 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | MRPL50P4-201 | ENST00000446432 | 475 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | MTND1P17-201 | ENST00000448961 | 204 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC107399.1-201 | ENST00000451226 | 265 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC025918.1-201 | ENST00000452467 | 383 nt | TSL 3 BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC234781.5-202 | ENST00000453508 | 426 nt | TSL 3 BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | IFT74-AS1-201 | ENST00000456198 | 405 nt | TSL 2 BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RPL21P39-201 | ENST00000463605 | 483 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | LINC02046-202 | ENST00000481334 | 390 nt | TSL 3 BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC087190.1-201 | ENST00000484462 | 480 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC093591.1-201 | ENST00000491435 | 481 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RPL21P16-201 | ENST00000495531 | 483 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AIG1P1-201 | ENST00000503376 | 148 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC020703.1-201 | ENST00000505051 | 521 nt | TSL 3 BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | SAR1B-211 | ENST00000509937 | 455 nt | TSL 5 BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RN7SKP24-201 | ENST00000515888 | 284 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RNU6-826P-201 | ENST00000516827 | 104 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RNU4ATAC17P-201 | ENST00000517272 | 120 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | TMCO5B-203 | ENST00000529623 | 509 nt | TSL 4 BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC092746.1-201 | ENST00000542819 | 562 nt | TSL 4 BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | GTF3AP2-201 | ENST00000557014 | 266 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC007347.1-201 | ENST00000563879 | 281 nt | TSL 3 BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC093249.1-201 | ENST00000567049 | 203 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | CPDP1-201 | ENST00000579660 | 283 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | ELOCP29-201 | ENST00000588193 | 334 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC018889.1-201 | ENST00000605372 | 397 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC124303.1-201 | ENST00000605703 | 360 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AL133215.3-201 | ENST00000609801 | 448 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AL161423.1-201 | ENST00000613700 | 262 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | MIR5739-201 | ENST00000619803 | 80 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AL355596.1-201 | ENST00000565399 | 3996 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC092593.1-201 | ENST00000515413 | 1815 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | PRKACB-218 | ENST00000610703 | 4240 nt | TSL 2 BASIC | 2.65 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AGR3-201 | ENST00000310398 | 749 nt | APPRIS P1 TSL 1 (best) BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | snoU2_19.1-201 | ENST00000362361 | 80 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RNU6-1285P-201 | ENST00000363480 | 105 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | Y_RNA.166-201 | ENST00000363730 | 102 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | SNORA5B-201 | ENST00000363786 | 132 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RNU6-301P-201 | ENST00000384277 | 107 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RNY3P14-201 | ENST00000384309 | 102 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AL360182.1-201 | ENST00000397433 | 468 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC074085.1-201 | ENST00000413598 | 418 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AL451074.5-201 | ENST00000415894 | 435 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AL445989.1-202 | ENST00000418943 | 776 nt | TSL 2 BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AL590135.1-201 | ENST00000422215 | 156 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC019205.3-201 | ENST00000424573 | 156 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AL445259.1-203 | ENST00000427828 | 251 nt | TSL 3 BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RPS3AP52-201 | ENST00000435639 | 297 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC016700.2-201 | ENST00000446011 | 156 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | snoU13.14-201 | ENST00000459372 | 104 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RPS29P27-201 | ENST00000463711 | 170 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RPL30P1-201 | ENST00000488676 | 339 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC015911.1-201 | ENST00000495111 | 156 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | MTND5P5-201 | ENST00000503764 | 376 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC016632.1-201 | ENST00000503994 | 196 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC021491.3-201 | ENST00000513378 | 156 nt | TSL 3 BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | LIAS-206 | ENST00000513731 | 826 nt | TSL 5 BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RN7SKP132-201 | ENST00000516001 | 208 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC023866.1-201 | ENST00000518064 | 579 nt | TSL 4 BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC079600.2-201 | ENST00000550076 | 130 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AL132819.1-201 | ENST00000555595 | 208 nt | TSL 3 BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | MIR5571-201 | ENST00000577998 | 113 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | UBE2V2P2-201 | ENST00000587677 | 504 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | ZNF861P-201 | ENST00000588126 | 639 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AL356157.2-201 | ENST00000605122 | 111 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | MIR8076-201 | ENST00000611401 | 83 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | SNORD98-201 | ENST00000636377 | 67 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | TPTEP1-208 | ENST00000636884 | 213 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | DNAH14-210 | ENST00000439375 | 13548 nt | APPRIS P1 TSL 5 BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | ANKRD36BP1-201 | ENST00000358576 | 1779 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | SEL1L2-201 | ENST00000284951 | 2224 nt | APPRIS P1 TSL 5 BASIC | 2.64 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | SIRT1-202 | ENST00000403579 | 3333 nt | TSL 1 (best) BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | FAM46D-201 | ENST00000308293 | 3011 nt | APPRIS P1 TSL 1 (best) BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | MTND4P12-201 | ENST00000498999 | 1377 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | OR4K2-204 | ENST00000641885 | 8681 nt | APPRIS P1 BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RRAS2-211 | ENST00000537760 | 2034 nt | TSL 2 BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | CYCSP48-201 | ENST00000417124 | 323 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AIMP1P2-201 | ENST00000425294 | 312 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC093423.2-201 | ENST00000429074 | 437 nt | TSL 3 BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | GPM6BP3-201 | ENST00000442797 | 145 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AL442638.1-201 | ENST00000443359 | 237 nt | TSL 5 BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | MTND4P18-201 | ENST00000447010 | 465 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | EEF1B2P7-201 | ENST00000451177 | 676 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | LINC01077-201 | ENST00000452288 | 413 nt | TSL 3 BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC003982.1-202 | ENST00000469928 | 248 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC090096.1-201 | ENST00000489168 | 390 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | AC104564.1-201 | ENST00000493028 | 407 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | PTP4A1P4-201 | ENST00000512479 | 322 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | ACA59.1-201 | ENST00000515966 | 143 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | RNU5F-2P-201 | ENST00000516066 | 82 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| HCN3 | Q9P1Z3 | IGHVII-62-1-201 | ENST00000519283 | 235 nt | BASIC | 2.63 | □□□□□ -1.99 | | |