Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 U8.12-201ENST00000384701 133 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 MIR200C-201ENST00000384980 68 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 HLFP1-201ENST00000402375 499 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 CYCSP35-201ENST00000451978 304 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 CYP2C59P-201ENST00000457790 269 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 U8.18-201ENST00000459285 133 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 RNU6-635P-201ENST00000516651 102 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 SCARNA14-201ENST00000516903 136 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 RNA5SP143-201ENST00000516936 115 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 RNU6-586P-201ENST00000517265 104 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 AC034114.1-201ENST00000520293 285 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 AL360157.1-201ENST00000565962 87 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 AC087499.8-201ENST00000578406 226 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 AC008739.3-201ENST00000603262 127 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 AC010999.1-201ENST00000611856 324 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 AC018692.3-201ENST00000623929 123 ntBASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
TRAIPQ9BWF2 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 AC092435.3-201ENST00000565538 3654 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 AC080128.1-201ENST00000474389 1917 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 Y_RNA.210-201ENST00000364161 110 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 RNU6-281P-201ENST00000384212 103 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 RNU6-1105P-201ENST00000384774 107 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 Z98941.1-201ENST00000407764 100 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 Y_RNA.595-201ENST00000410403 105 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 AL358176.2-201ENST00000425769 204 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 FCF1P4-201ENST00000448326 183 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 AC006539.3-201ENST00000454258 129 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 MTATP8P1-201ENST00000467115 207 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 AC103975.1-201ENST00000482506 483 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 CYCSP23-201ENST00000519781 313 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 MIR3616-201ENST00000584070 92 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 RPL17P51-201ENST00000605218 238 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 PRR13P7-201ENST00000605538 430 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 HMGB1P50-201ENST00000605814 607 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 AC005562.2-201ENST00000618264 111 ntBASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
TRAIPQ9BWF2 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 SNORA71.3-201ENST00000362582 128 ntBASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 Y_RNA.153-201ENST00000363615 91 ntBASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 Y_RNA.179-201ENST00000363844 90 ntBASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 SNORA73.2-201ENST00000364946 201 ntBASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 RNU6-708P-201ENST00000384217 107 ntBASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 MIR670-201ENST00000390142 98 ntBASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 RNU6-1328P-201ENST00000410938 106 ntBASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 AC027124.2-201ENST00000428249 105 ntBASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 ATP5HP2-201ENST00000433885 485 ntBASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 AC080013.2-201ENST00000460866 323 ntBASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 AC091179.1-201ENST00000461606 579 ntBASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 AL133162.1-201ENST00000463228 453 ntBASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 RNU6-1143P-201ENST00000516125 104 ntBASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 RN7SKP49-201ENST00000516675 260 ntBASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 AC138915.1-201ENST00000565427 1685 ntBASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
TRAIPQ9BWF2 MIR423-201ENST00000362201 94 ntBASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 RNA5SP240-201ENST00000365355 128 ntBASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 Y_RNA.439-201ENST00000384119 94 ntBASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 SNORA18.3-201ENST00000384122 132 ntBASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 RNU6-713P-201ENST00000384761 107 ntBASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 Y_RNA.597-201ENST00000410463 100 ntBASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 AC073910.1-201ENST00000445047 438 ntBASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 AC110794.1-201ENST00000505816 425 ntBASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 RNA5SP164-201ENST00000516533 110 ntBASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 AC026403.1-201ENST00000518938 295 ntBASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 MIR5187-201ENST00000583479 76 ntBASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 TCL6_2.1-201ENST00000615162 119 ntBASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 U6.92-201ENST00000636464 89 ntBASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TRAIPQ9BWF2 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 TNPO1P3-201ENST00000436471 2662 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 121.2 ms