Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 DLEU2_6.3-201ENST00000340052 136 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 AC092268.1-201ENST00000342691 405 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 Y_RNA.170-201ENST00000363746 110 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 RNU5F-3P-201ENST00000363767 117 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 Y_RNA.233-201ENST00000364407 101 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 Y_RNA.331-201ENST00000365267 102 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 RNU6-1289P-201ENST00000384431 106 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 MIR200C-201ENST00000384980 68 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 AC078809.1-201ENST00000427601 140 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 AC106707.2-201ENST00000484182 374 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 AP001025.1-201ENST00000486139 332 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 AC005921.1-201ENST00000510589 286 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 RN7SKP18-201ENST00000516005 275 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 RNA5SP54-201ENST00000516951 92 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 AC021231.3-201ENST00000558497 370 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 AC005176.2-201ENST00000596933 147 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 DLEU2_6.2-201ENST00000620994 136 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 U4.6-201ENST00000621618 127 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 USP8P1-201ENST00000494673 3183 ntBASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
ZKSCAN3Q9BRR0 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 RNA5SP197-201ENST00000363357 119 ntBASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 Y_RNA.291-201ENST00000364886 113 ntBASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 MIR487A-201ENST00000385009 80 ntBASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 SETP5-201ENST00000437270 562 ntBASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 SNORD2.1-201ENST00000458762 69 ntBASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 RPL21P129-201ENST00000491732 478 ntBASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 SNORA31.23-201ENST00000517219 133 ntBASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 CKS1BP7-201ENST00000522230 235 ntBASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 NACAP3-201ENST00000552100 481 ntBASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 AL360157.1-201ENST00000565962 87 ntBASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 AC073349.3-201ENST00000617616 186 ntBASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 AC009093.8-201ENST00000641769 292 ntBASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC4.24□□□□□ -1.73
ZKSCAN3Q9BRR0 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 Y_RNA.240-201ENST00000364469 95 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 RNU6-1280P-201ENST00000365211 107 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 Y_RNA.383-201ENST00000383855 97 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 MIR23B-201ENST00000384832 97 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 Y_RNA.595-201ENST00000410403 105 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 RPS26P42-201ENST00000413485 326 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 HMGN2P31-201ENST00000432430 273 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 MRPS10P1-201ENST00000448483 130 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 AP001324.2-201ENST00000461163 319 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 RPL21P104-201ENST00000464143 478 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 AC091021.1-201ENST00000468051 388 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 RPS29P26-201ENST00000477483 171 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 MIR4444-1-201ENST00000581696 74 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 MIR4444-2-201ENST00000584390 74 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 AL451007.1-201ENST00000595491 289 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 KLKP1-201ENST00000595979 403 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 MIR3529-201ENST00000637713 78 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 AL109809.4-201ENST00000603520 2185 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 AC135776.4-201ENST00000624300 1904 ntBASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
ZKSCAN3Q9BRR0 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 SNORA71.3-201ENST00000362582 128 ntBASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 SNORA36A-201ENST00000384221 132 ntBASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 RNU6-1035P-201ENST00000384477 107 ntBASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 RNU1-89P-201ENST00000384592 164 ntBASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 MIR613-201ENST00000385248 95 ntBASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 RNA5SP171-201ENST00000391071 115 ntBASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 RNU6-918P-201ENST00000391219 106 ntBASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 RNA5SP239-201ENST00000410218 129 ntBASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 AC244670.1-201ENST00000436879 112 ntBASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 AC012308.1-201ENST00000451232 178 ntBASIC4.22□□□□□ -1.73
ZKSCAN3Q9BRR0 RN7SL93P-201ENST00000463035 293 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms