Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 AL670379.2-201ENST00000604983 252 ntBASIC2.77□□□□□ -1.97
NPAS1Q99742 AC090971.5-201ENST00000621102 293 ntBASIC2.77□□□□□ -1.97
NPAS1Q99742 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
NPAS1Q99742 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.77□□□□□ -1.97
NPAS1Q99742 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC2.77□□□□□ -1.97
NPAS1Q99742 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
NPAS1Q99742 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
NPAS1Q99742 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
NPAS1Q99742 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.76□□□□□ -1.97
NPAS1Q99742 SNORD32A-201ENST00000364805 84 ntBASIC2.76□□□□□ -1.97
NPAS1Q99742 MIR128-1-201ENST00000384921 82 ntBASIC2.76□□□□□ -1.97
NPAS1Q99742 MIR186-201ENST00000384988 86 ntBASIC2.76□□□□□ -1.97
NPAS1Q99742 SNORA48.2-201ENST00000390926 124 ntBASIC2.76□□□□□ -1.97
NPAS1Q99742 AL512633.1-201ENST00000399931 655 ntBASIC2.76□□□□□ -1.97
NPAS1Q99742 RNU6-174P-201ENST00000410406 106 ntBASIC2.76□□□□□ -1.97
NPAS1Q99742 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.76□□□□□ -1.97
NPAS1Q99742 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.76□□□□□ -1.97
NPAS1Q99742 NUP35P1-201ENST00000422734 947 ntBASIC2.76□□□□□ -1.97
NPAS1Q99742 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.76□□□□□ -1.97
NPAS1Q99742 UQCRHP3-201ENST00000451503 251 ntBASIC2.76□□□□□ -1.97
NPAS1Q99742 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.76□□□□□ -1.97
NPAS1Q99742 MIR2053-201ENST00000459295 91 ntBASIC2.76□□□□□ -1.97
NPAS1Q99742 AC073901.1-201ENST00000462471 408 ntBASIC2.76□□□□□ -1.97
NPAS1Q99742 AC068781.1-201ENST00000488231 618 ntBASIC2.76□□□□□ -1.97
NPAS1Q99742 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.76□□□□□ -1.97
NPAS1Q99742 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.76□□□□□ -1.97
NPAS1Q99742 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.76□□□□□ -1.97
NPAS1Q99742 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.76□□□□□ -1.97
NPAS1Q99742 CBX3P8-201ENST00000532412 525 ntBASIC2.76□□□□□ -1.97
NPAS1Q99742 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.76□□□□□ -1.97
NPAS1Q99742 AC079598.5-201ENST00000547460 117 ntBASIC2.76□□□□□ -1.97
NPAS1Q99742 AC107871.2-201ENST00000612894 502 ntBASIC2.76□□□□□ -1.97
NPAS1Q99742 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.75□□□□□ -1.97
NPAS1Q99742 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.75□□□□□ -1.97
NPAS1Q99742 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
NPAS1Q99742 AC092268.1-201ENST00000342691 405 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 MIR22-201ENST00000362190 85 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 RNU6-655P-201ENST00000362858 107 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 RNU6-694P-201ENST00000364071 147 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 RNU6-784P-201ENST00000384330 106 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 SNORA46-201ENST00000384762 135 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.75□□□□□ -1.97
NPAS1Q99742 RPL32P35-201ENST00000415214 394 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 AC078809.1-201ENST00000427601 140 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.75□□□□□ -1.97
NPAS1Q99742 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.75□□□□□ -1.97
NPAS1Q99742 RPS3AP12-201ENST00000443616 753 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.75□□□□□ -1.97
NPAS1Q99742 AC117440.1-201ENST00000474107 571 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 AIG1P1-201ENST00000503376 148 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 AC021146.2-201ENST00000504736 556 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 AC022493.2-201ENST00000506122 481 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 RNU2-53P-201ENST00000516257 147 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 RNA5SP341-201ENST00000516261 117 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 AC109329.1-201ENST00000518744 317 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.75□□□□□ -1.97
NPAS1Q99742 MRPS36P4-201ENST00000534436 298 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.75□□□□□ -1.97
NPAS1Q99742 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.75□□□□□ -1.97
NPAS1Q99742 AC098657.3-201ENST00000620434 263 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 MIR622-201ENST00000638396 96 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
NPAS1Q99742 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.75□□□□□ -1.97
NPAS1Q99742 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.75□□□□□ -1.97
NPAS1Q99742 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
NPAS1Q99742 ZNF299P-201ENST00000406845 1804 ntBASIC2.75□□□□□ -1.97
NPAS1Q99742 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.74□□□□□ -1.97
NPAS1Q99742 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
NPAS1Q99742 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.74□□□□□ -1.97
NPAS1Q99742 SNORD50.1-201ENST00000362987 71 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 SNORA75.6-201ENST00000391318 127 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 RPL21P75-201ENST00000396599 483 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 RPL21P28-201ENST00000401418 483 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 RN7SKP220-201ENST00000410611 288 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 RNA5SP494-201ENST00000410653 129 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 MTCO2P12-201ENST00000427426 682 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 AL513124.1-201ENST00000450410 614 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 ELOCP24-201ENST00000456370 334 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 RPL21P39-201ENST00000463605 483 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 AC087190.1-201ENST00000484462 480 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.74□□□□□ -1.97
NPAS1Q99742 AC093591.1-201ENST00000491435 481 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 RPL21P16-201ENST00000495531 483 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 CKS1BP2-201ENST00000497342 240 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 AC005741.1-201ENST00000511094 432 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.74□□□□□ -1.97
NPAS1Q99742 AC009318.2-201ENST00000610917 651 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.74□□□□□ -1.97
NPAS1Q99742 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 AC091953.5-201ENST00000622919 233 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 AC090517.3-201ENST00000625170 141 ntBASIC2.74□□□□□ -1.97
NPAS1Q99742 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
NPAS1Q99742 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
NPAS1Q99742 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
NPAS1Q99742 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.73□□□□□ -1.97
NPAS1Q99742 MIR422A-201ENST00000362286 90 ntBASIC2.73□□□□□ -1.97
NPAS1Q99742 RNY1P16-201ENST00000363063 111 ntBASIC2.73□□□□□ -1.97
NPAS1Q99742 SNORA68.1-201ENST00000364537 132 ntBASIC2.73□□□□□ -1.97
NPAS1Q99742 RN7SKP61-201ENST00000410642 295 ntBASIC2.73□□□□□ -1.97
NPAS1Q99742 AL590556.1-201ENST00000423231 483 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 144.9 ms