Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.58□□□□□ -2
SKA1Q96BD8 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.58□□□□□ -2
SKA1Q96BD8 AP001836.1-201ENST00000604675 523 ntBASIC2.58□□□□□ -2
SKA1Q96BD8 AC004492.1-201ENST00000607036 742 ntBASIC2.58□□□□□ -2
SKA1Q96BD8 AL357078.3-201ENST00000607528 618 ntBASIC2.58□□□□□ -2
SKA1Q96BD8 AC092807.2-201ENST00000609367 243 ntBASIC2.58□□□□□ -2
SKA1Q96BD8 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.58□□□□□ -2
SKA1Q96BD8 AC099654.12-201ENST00000639868 649 ntBASIC2.58□□□□□ -2
SKA1Q96BD8 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.58□□□□□ -2
SKA1Q96BD8 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
SKA1Q96BD8 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.57□□□□□ -2
SKA1Q96BD8 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
SKA1Q96BD8 SNORD32A-201ENST00000364805 84 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 RNU4-20P-201ENST00000365601 151 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 SNORA80E-201ENST00000384744 137 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 HMGN2P39-201ENST00000398005 273 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 AL355497.1-201ENST00000406262 551 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 MIR1261-201ENST00000408659 82 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 RN7SKP192-201ENST00000411291 327 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 DLGAP5P1-201ENST00000430307 464 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.57□□□□□ -2
SKA1Q96BD8 RNU6-1208P-201ENST00000459588 107 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.57□□□□□ -2
SKA1Q96BD8 SNORA19.2-201ENST00000516013 114 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 RNU6-506P-201ENST00000516553 94 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 RNU6-1069P-201ENST00000516612 133 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 RNU6-965P-201ENST00000516721 96 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 RNU2-19P-201ENST00000517288 84 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 TRAV32-201ENST00000553993 340 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 AL118558.2-201ENST00000556294 238 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 MIR5092-201ENST00000583139 88 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 AC087241.4-201ENST00000612441 480 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 AL132822.1-201ENST00000617063 513 ntBASIC2.57□□□□□ -2
SKA1Q96BD8 RNU4-75P-201ENST00000364621 146 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 U8.8-201ENST00000365399 135 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 MIR29C-201ENST00000385231 88 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 SNORD73A-201ENST00000386062 65 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 EIF4E2P1-201ENST00000393781 255 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 MIR1294-201ENST00000408503 142 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 RNU2-48P-201ENST00000410694 191 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 AP000275.1-201ENST00000411943 390 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 RPL23AP95-201ENST00000426806 265 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 AL133396.1-201ENST00000432048 687 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 AL121890.1-201ENST00000435457 205 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 IPO7P1-201ENST00000442031 636 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 AL031659.1-201ENST00000447075 539 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.56□□□□□ -2
SKA1Q96BD8 AC055731.1-201ENST00000474387 401 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 YWHAEP4-201ENST00000505390 198 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.56□□□□□ -2
SKA1Q96BD8 AC068137.3-201ENST00000639191 341 ntBASIC2.56□□□□□ -2
SKA1Q96BD8 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.56□□□□□ -2
SKA1Q96BD8 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
SKA1Q96BD8 U8.2-201ENST00000363156 134 ntBASIC2.55□□□□□ -2
SKA1Q96BD8 Y_RNA.231-201ENST00000364358 102 ntBASIC2.55□□□□□ -2
SKA1Q96BD8 MIR514A2-201ENST00000385131 88 ntBASIC2.55□□□□□ -2
SKA1Q96BD8 MIR514A3-201ENST00000385132 88 ntBASIC2.55□□□□□ -2
SKA1Q96BD8 SRIP3-201ENST00000413200 219 ntBASIC2.55□□□□□ -2
SKA1Q96BD8 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.55□□□□□ -2
SKA1Q96BD8 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.55□□□□□ -2
SKA1Q96BD8 AC011816.1-201ENST00000441346 546 ntBASIC2.55□□□□□ -2
SKA1Q96BD8 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.55□□□□□ -2
SKA1Q96BD8 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.55□□□□□ -2
SKA1Q96BD8 UBL5P3-201ENST00000475112 231 ntBASIC2.55□□□□□ -2
SKA1Q96BD8 AC145146.1-201ENST00000496370 254 ntBASIC2.55□□□□□ -2
SKA1Q96BD8 RPL38P4-201ENST00000502376 214 ntBASIC2.55□□□□□ -2
SKA1Q96BD8 RN7SKP24-201ENST00000515888 284 ntBASIC2.55□□□□□ -2
SKA1Q96BD8 RNU6-314P-201ENST00000516574 104 ntBASIC2.55□□□□□ -2
SKA1Q96BD8 RNU6-567P-201ENST00000516746 107 ntBASIC2.55□□□□□ -2
SKA1Q96BD8 IGLV3-17-201ENST00000519099 244 ntBASIC2.55□□□□□ -2
SKA1Q96BD8 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.55□□□□□ -2
SKA1Q96BD8 AP000654.2-201ENST00000605633 586 ntBASIC2.55□□□□□ -2
SKA1Q96BD8 DISC2.1-201ENST00000612827 205 ntBASIC2.55□□□□□ -2
SKA1Q96BD8 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.55□□□□□ -2
SKA1Q96BD8 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.55□□□□□ -2
SKA1Q96BD8 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SKA1Q96BD8 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.54□□□□□ -2
SKA1Q96BD8 OR4G1P-203ENST00000641984 1631 ntBASIC2.54□□□□□ -2
SKA1Q96BD8 RNU4-15P-201ENST00000362613 141 ntBASIC2.54□□□□□ -2
SKA1Q96BD8 RNU4-40P-201ENST00000364351 143 ntBASIC2.54□□□□□ -2
SKA1Q96BD8 BTF3L4P2-201ENST00000392798 346 ntBASIC2.54□□□□□ -2
SKA1Q96BD8 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.54□□□□□ -2
SKA1Q96BD8 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.54□□□□□ -2
SKA1Q96BD8 PRELID3BP1-201ENST00000457142 540 ntBASIC2.54□□□□□ -2
SKA1Q96BD8 AC132942.1-201ENST00000486753 483 ntBASIC2.54□□□□□ -2
SKA1Q96BD8 AC025423.5-201ENST00000550230 219 ntBASIC2.54□□□□□ -2
SKA1Q96BD8 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.54□□□□□ -2
SKA1Q96BD8 MIR3923-201ENST00000579521 83 ntBASIC2.54□□□□□ -2
SKA1Q96BD8 AC092954.2-201ENST00000609103 430 ntBASIC2.54□□□□□ -2
SKA1Q96BD8 AL121757.2-201ENST00000611223 313 ntBASIC2.54□□□□□ -2
SKA1Q96BD8 AL359757.2-201ENST00000624309 274 ntBASIC2.54□□□□□ -2
SKA1Q96BD8 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.54□□□□□ -2
SKA1Q96BD8 AC121333.1-201ENST00000567488 2709 ntBASIC2.53□□□□□ -2
SKA1Q96BD8 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
SKA1Q96BD8 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.53□□□□□ -2
SKA1Q96BD8 RNU6-1159P-201ENST00000362933 107 ntBASIC2.53□□□□□ -2
SKA1Q96BD8 Y_RNA.372-201ENST00000365599 102 ntBASIC2.53□□□□□ -2
SKA1Q96BD8 RNU6-483P-201ENST00000384088 108 ntBASIC2.53□□□□□ -2
SKA1Q96BD8 Y_RNA.504-201ENST00000384481 104 ntBASIC2.53□□□□□ -2
SKA1Q96BD8 SNORA67.4-201ENST00000384688 142 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 139.9 ms