Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.06□□□□□ -2.4
CCDC58Q4VC31 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC0.06□□□□□ -2.4
CCDC58Q4VC31 AC092325.1-201ENST00000566449 554 ntBASIC0.06□□□□□ -2.4
CCDC58Q4VC31 MIR4781-201ENST00000585250 76 ntBASIC0.06□□□□□ -2.4
CCDC58Q4VC31 AL360219.1-201ENST00000610230 366 ntBASIC0.06□□□□□ -2.4
CCDC58Q4VC31 AL138955.1-201ENST00000622881 1040 ntBASIC0.06□□□□□ -2.4
CCDC58Q4VC31 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.06□□□□□ -2.4
CCDC58Q4VC31 AC107982.1-201ENST00000507171 1300 ntBASIC0.06□□□□□ -2.4
CCDC58Q4VC31 AL159152.1-201ENST00000635019 2587 ntBASIC0.05□□□□□ -2.4
CCDC58Q4VC31 AL589743.1-201ENST00000551932 2712 ntBASIC0.05□□□□□ -2.4
CCDC58Q4VC31 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC0.05□□□□□ -2.4
CCDC58Q4VC31 RNU6-1335P-201ENST00000365426 107 ntBASIC0.05□□□□□ -2.4
CCDC58Q4VC31 MIR216A-201ENST00000385063 110 ntBASIC0.05□□□□□ -2.4
CCDC58Q4VC31 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.05□□□□□ -2.4
CCDC58Q4VC31 AC027644.1-201ENST00000419595 298 ntBASIC0.05□□□□□ -2.4
CCDC58Q4VC31 SNRPEP8-201ENST00000442866 260 ntBASIC0.05□□□□□ -2.4
CCDC58Q4VC31 AL353718.1-201ENST00000451028 517 ntBASIC0.05□□□□□ -2.4
CCDC58Q4VC31 MRPL42P4-201ENST00000453267 443 ntBASIC0.05□□□□□ -2.4
CCDC58Q4VC31 AC104982.1-201ENST00000478775 574 ntBASIC0.05□□□□□ -2.4
CCDC58Q4VC31 MTND2P33-201ENST00000506452 1031 ntBASIC0.05□□□□□ -2.4
CCDC58Q4VC31 AC105313.1-201ENST00000509121 353 ntBASIC0.05□□□□□ -2.4
CCDC58Q4VC31 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC0.05□□□□□ -2.4
CCDC58Q4VC31 AC005332.6-201ENST00000613178 446 ntBASIC0.05□□□□□ -2.4
CCDC58Q4VC31 AL138726.1-201ENST00000614873 333 ntBASIC0.05□□□□□ -2.4
CCDC58Q4VC31 RNU6-817P-201ENST00000391083 104 ntBASIC0.04□□□□□ -2.4
CCDC58Q4VC31 SNORD99-201ENST00000408612 74 ntBASIC0.04□□□□□ -2.4
CCDC58Q4VC31 RNU6-1025P-201ENST00000410629 104 ntBASIC0.04□□□□□ -2.4
CCDC58Q4VC31 MTCO3P41-201ENST00000414801 328 ntBASIC0.04□□□□□ -2.4
CCDC58Q4VC31 RPL23AP95-201ENST00000426806 265 ntBASIC0.04□□□□□ -2.4
CCDC58Q4VC31 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC0.04□□□□□ -2.4
CCDC58Q4VC31 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.04□□□□□ -2.4
CCDC58Q4VC31 RNU6-1223P-201ENST00000517124 104 ntBASIC0.04□□□□□ -2.4
CCDC58Q4VC31 AC087854.1-201ENST00000519706 414 ntBASIC0.04□□□□□ -2.4
CCDC58Q4VC31 AL137100.2-201ENST00000555786 315 ntBASIC0.04□□□□□ -2.4
CCDC58Q4VC31 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC0.04□□□□□ -2.4
CCDC58Q4VC31 MIR8070-201ENST00000616510 88 ntBASIC0.04□□□□□ -2.4
CCDC58Q4VC31 Z69720.2-201ENST00000624755 279 ntBASIC0.04□□□□□ -2.4
CCDC58Q4VC31 SNORD116-20-201ENST00000384529 92 ntBASIC0.03□□□□□ -2.4
CCDC58Q4VC31 RNA5SP247-201ENST00000411181 105 ntBASIC0.03□□□□□ -2.4
CCDC58Q4VC31 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.03□□□□□ -2.4
CCDC58Q4VC31 AC005094.1-201ENST00000440420 368 ntBASIC0.03□□□□□ -2.4
CCDC58Q4VC31 MTCO3P43-201ENST00000440974 771 ntBASIC0.03□□□□□ -2.4
CCDC58Q4VC31 HESX1-202ENST00000473921 757 ntTSL 5 BASIC0.03□□□□□ -2.4
CCDC58Q4VC31 AC104806.1-201ENST00000508720 308 ntBASIC0.03□□□□□ -2.4
CCDC58Q4VC31 MTCO3P28-201ENST00000513351 515 ntBASIC0.03□□□□□ -2.4
CCDC58Q4VC31 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC0.03□□□□□ -2.4
CCDC58Q4VC31 RNU5F-2P-201ENST00000516066 82 ntBASIC0.03□□□□□ -2.4
CCDC58Q4VC31 RNU6-405P-201ENST00000516637 110 ntBASIC0.03□□□□□ -2.4
CCDC58Q4VC31 RNU6-467P-201ENST00000517027 110 ntBASIC0.03□□□□□ -2.4
CCDC58Q4VC31 RNU6-1315P-201ENST00000517187 99 ntBASIC0.03□□□□□ -2.4
CCDC58Q4VC31 MIR4298-201ENST00000584380 73 ntBASIC0.03□□□□□ -2.4
CCDC58Q4VC31 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
CCDC58Q4VC31 MTCYBP5-201ENST00000423752 1135 ntBASIC0.02□□□□□ -2.41
CCDC58Q4VC31 DPRXP1-201ENST00000426312 460 ntBASIC0.02□□□□□ -2.41
CCDC58Q4VC31 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC0.02□□□□□ -2.41
CCDC58Q4VC31 MTND4P25-201ENST00000441039 533 ntBASIC0.02□□□□□ -2.41
CCDC58Q4VC31 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.02□□□□□ -2.41
CCDC58Q4VC31 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.02□□□□□ -2.41
CCDC58Q4VC31 AC108729.2-201ENST00000476543 840 ntBASIC0.02□□□□□ -2.41
CCDC58Q4VC31 AC092991.1-201ENST00000477176 376 ntBASIC0.02□□□□□ -2.41
CCDC58Q4VC31 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC0.02□□□□□ -2.41
CCDC58Q4VC31 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.02□□□□□ -2.41
CCDC58Q4VC31 HIGD1AP17-201ENST00000554576 276 ntBASIC0.02□□□□□ -2.41
CCDC58Q4VC31 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC0.02□□□□□ -2.41
CCDC58Q4VC31 U3.9-201ENST00000363823 204 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 RNU6-481P-201ENST00000384194 107 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.01□□□□□ -2.41
CCDC58Q4VC31 SNORD89-201ENST00000390981 114 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 SNORA16.2-201ENST00000390991 127 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 GXYLT1P1-201ENST00000446657 490 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC0.01□□□□□ -2.41
CCDC58Q4VC31 RPS20P10-201ENST00000451209 253 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 RNU7-21P-201ENST00000459430 62 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 AC104563.1-201ENST00000476147 376 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC0.01□□□□□ -2.41
CCDC58Q4VC31 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.01□□□□□ -2.41
CCDC58Q4VC31 AP003355.1-201ENST00000518956 587 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 AC011979.2-201ENST00000527568 352 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 SLC2A13P1-201ENST00000531560 322 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.01□□□□□ -2.41
CCDC58Q4VC31 AL132657.2-201ENST00000564417 358 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 AC091135.1-201ENST00000585943 307 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 AL513534.2-201ENST00000603836 250 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 AC092354.1-201ENST00000606057 376 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 CASC19-280ENST00000642102 1351 ntBASIC0.01□□□□□ -2.41
CCDC58Q4VC31 RNU6-534P-201ENST00000364877 106 ntBASIC0□□□□□ -2.41
CCDC58Q4VC31 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0□□□□□ -2.41
CCDC58Q4VC31 RPL22P18-201ENST00000417197 377 ntBASIC0□□□□□ -2.41
CCDC58Q4VC31 AL591704.1-201ENST00000432574 275 ntBASIC0□□□□□ -2.41
CCDC58Q4VC31 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0□□□□□ -2.41
CCDC58Q4VC31 DAP3P1-201ENST00000441522 278 ntBASIC0□□□□□ -2.41
CCDC58Q4VC31 MTND1P31-201ENST00000449206 961 ntBASIC0□□□□□ -2.41
CCDC58Q4VC31 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC0□□□□□ -2.41
CCDC58Q4VC31 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC0□□□□□ -2.41
CCDC58Q4VC31 RNU7-90P-201ENST00000459216 62 ntBASIC0□□□□□ -2.41
CCDC58Q4VC31 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC0□□□□□ -2.41
CCDC58Q4VC31 AL157871.3-201ENST00000557231 293 ntBASIC0□□□□□ -2.41
CCDC58Q4VC31 MIR5695-201ENST00000579717 85 ntBASIC0□□□□□ -2.41
CCDC58Q4VC31 AC025627.3-201ENST00000582078 182 ntBASIC0□□□□□ -2.41
CCDC58Q4VC31 MIR3136-201ENST00000583498 78 ntBASIC0□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 167.5 ms