Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC023824.3-201ENST00000569003 562 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC0.16□□□□□ -2.38
CHD9Q3L8U1 MIR4666A-201ENST00000580160 79 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AL118556.2-201ENST00000614375 824 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 MIR3529-201ENST00000637713 78 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 RNU6-1327P-201ENST00000365302 105 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 SNORD116-23-201ENST00000384645 92 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AC016831.2-201ENST00000417179 352 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 EIF1P1-201ENST00000421436 341 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 RPL31P54-201ENST00000429803 370 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC0.16□□□□□ -2.38
CHD9Q3L8U1 ELOCP30-201ENST00000447108 299 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AC093259.1-201ENST00000509755 300 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AC005261.5-201ENST00000596280 355 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AP003465.2-201ENST00000602571 373 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AL158163.2-201ENST00000619110 700 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AC092656.1-203ENST00000624134 423 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 SNORD18A-201ENST00000363753 72 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 RNU6-512P-201ENST00000364438 103 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 RNU6-637P-201ENST00000384050 107 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 RNU6-932P-201ENST00000391108 106 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AL353621.1-201ENST00000418219 243 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 RPL21P111-201ENST00000418453 477 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 MTCO2P5-201ENST00000422621 426 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 MTND4P24-201ENST00000424002 397 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 SNX2P2-201ENST00000424553 323 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AL589872.1-201ENST00000426602 288 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 HMGN2P22-201ENST00000427588 175 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 LARP1BP3-201ENST00000437229 869 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.15□□□□□ -2.39
CHD9Q3L8U1 snoU13.14-201ENST00000459372 104 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 RPL26P26-201ENST00000480251 434 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 RNU6-586P-201ENST00000517265 104 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AC141557.1-201ENST00000540982 400 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 EIF1P4-201ENST00000572664 335 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 MIR4667-201ENST00000578933 66 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AP000811.1-201ENST00000603803 651 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 uc_338.6-201ENST00000613544 171 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC0.15□□□□□ -2.39
CHD9Q3L8U1 SNORA72.2-201ENST00000365028 127 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 SUGT1P1-201ENST00000379514 476 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 RNU6-114P-201ENST00000384704 105 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AF228730.1-201ENST00000397972 663 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.15□□□□□ -2.39
CHD9Q3L8U1 PDCL2P1-201ENST00000419302 352 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.15□□□□□ -2.39
CHD9Q3L8U1 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC0.15□□□□□ -2.39
CHD9Q3L8U1 RPS26P45-201ENST00000471748 340 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AC025465.4-201ENST00000513422 638 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 SNORD60.2-201ENST00000516883 86 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 UTP23-205ENST00000520733 369 ntTSL 3 BASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AC104417.1-201ENST00000523974 751 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 MIR3678-201ENST00000578455 94 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 RPL30P11-203ENST00000598995 310 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AC004492.1-201ENST00000607036 742 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AL365204.3-201ENST00000612448 685 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.15□□□□□ -2.39
CHD9Q3L8U1 AL596245.1-201ENST00000618994 362 ntBASIC0.15□□□□□ -2.39
CHD9Q3L8U1 Y_RNA.55-201ENST00000362797 102 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 RNA5SP214-201ENST00000363378 118 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 RNU6-622P-201ENST00000384272 103 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
CHD9Q3L8U1 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
CHD9Q3L8U1 RNU4-22P-201ENST00000411058 166 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 AL590623.1-201ENST00000427864 105 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC0.14□□□□□ -2.39
CHD9Q3L8U1 NDUFB4P10-201ENST00000452541 359 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 MED28P2-201ENST00000475771 317 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC0.14□□□□□ -2.39
CHD9Q3L8U1 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC0.14□□□□□ -2.39
CHD9Q3L8U1 AC090502.2-201ENST00000549267 280 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 SNRPGP1-201ENST00000553864 222 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.14□□□□□ -2.39
CHD9Q3L8U1 AC090330.1-201ENST00000588646 764 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 MIR6134-201ENST00000617606 109 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC0.14□□□□□ -2.39
CHD9Q3L8U1 MTND4P16-201ENST00000466108 1367 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 RNU6-28P-201ENST00000362378 107 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 RNA5SP327-201ENST00000362494 101 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 SNORD114-19-201ENST00000363072 75 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 SNORD114-3-201ENST00000364969 75 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC0.14□□□□□ -2.39
CHD9Q3L8U1 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.14□□□□□ -2.39
CHD9Q3L8U1 AC244098.3-201ENST00000424803 96 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 MTND1P30-201ENST00000441241 901 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 AC092001.1-201ENST00000453012 261 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 BET1P1-201ENST00000482276 359 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 AC011406.1-201ENST00000512440 370 ntBASIC0.14□□□□□ -2.39
CHD9Q3L8U1 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC0.14□□□□□ -2.39
CHD9Q3L8U1 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
CHD9Q3L8U1 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC0.14□□□□□ -2.39
CHD9Q3L8U1 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 123.7 ms