Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AL162713.1-201ENST00000604480 262 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 AL080274.1-201ENST00000605565 220 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 RPL23AP88-201ENST00000605759 454 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 AC073476.4-201ENST00000628409 72 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 U6.105-201ENST00000637379 88 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.78□□□□□ -1.8
SF3A1Q15459 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
SF3A1Q15459 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.77□□□□□ -1.81
SF3A1Q15459 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
SF3A1Q15459 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
SF3A1Q15459 RNU6-99P-201ENST00000364721 107 ntBASIC3.77□□□□□ -1.81
SF3A1Q15459 SET-203ENST00000372688 801 ntTSL 2 BASIC3.77□□□□□ -1.81
SF3A1Q15459 U6atac.2-201ENST00000408644 118 ntBASIC3.77□□□□□ -1.81
SF3A1Q15459 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.77□□□□□ -1.81
SF3A1Q15459 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC3.77□□□□□ -1.81
SF3A1Q15459 AC012306.1-201ENST00000423267 114 ntBASIC3.77□□□□□ -1.81
SF3A1Q15459 AC092423.1-201ENST00000430165 186 ntBASIC3.77□□□□□ -1.81
SF3A1Q15459 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.77□□□□□ -1.81
SF3A1Q15459 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.77□□□□□ -1.81
SF3A1Q15459 AC007677.1-201ENST00000445757 515 ntBASIC3.77□□□□□ -1.81
SF3A1Q15459 CKS1BP2-201ENST00000497342 240 ntBASIC3.77□□□□□ -1.81
SF3A1Q15459 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.77□□□□□ -1.81
SF3A1Q15459 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC3.77□□□□□ -1.81
SF3A1Q15459 Y_RNA.661-201ENST00000516003 99 ntBASIC3.77□□□□□ -1.81
SF3A1Q15459 RN7SKP282-201ENST00000516824 299 ntBASIC3.77□□□□□ -1.81
SF3A1Q15459 SCARNA20.6-201ENST00000517251 106 ntBASIC3.77□□□□□ -1.81
SF3A1Q15459 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.77□□□□□ -1.81
SF3A1Q15459 AC004584.2-201ENST00000570407 410 ntBASIC3.77□□□□□ -1.81
SF3A1Q15459 MIR3117-201ENST00000584034 78 ntBASIC3.77□□□□□ -1.81
SF3A1Q15459 AC044792.1-201ENST00000593294 196 ntBASIC3.77□□□□□ -1.81
SF3A1Q15459 AC004832.5-201ENST00000608677 401 ntBASIC3.77□□□□□ -1.81
SF3A1Q15459 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.77□□□□□ -1.81
SF3A1Q15459 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
SF3A1Q15459 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SF3A1Q15459 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
SF3A1Q15459 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
SF3A1Q15459 MTND5P27-201ENST00000428871 1720 ntBASIC3.76□□□□□ -1.81
SF3A1Q15459 RNU6-490P-201ENST00000362985 107 ntBASIC3.76□□□□□ -1.81
SF3A1Q15459 RNU5B-2P-201ENST00000363036 113 ntBASIC3.76□□□□□ -1.81
SF3A1Q15459 RNU6-805P-201ENST00000365643 106 ntBASIC3.76□□□□□ -1.81
SF3A1Q15459 Y_RNA.445-201ENST00000384168 102 ntBASIC3.76□□□□□ -1.81
SF3A1Q15459 MIR490-201ENST00000384865 128 ntBASIC3.76□□□□□ -1.81
SF3A1Q15459 MIR32-201ENST00000384965 70 ntBASIC3.76□□□□□ -1.81
SF3A1Q15459 MIR627-201ENST00000384979 97 ntBASIC3.76□□□□□ -1.81
SF3A1Q15459 MIR208B-201ENST00000401172 77 ntBASIC3.76□□□□□ -1.81
SF3A1Q15459 RPL32P35-201ENST00000415214 394 ntBASIC3.76□□□□□ -1.81
SF3A1Q15459 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.76□□□□□ -1.81
SF3A1Q15459 RNU7-175P-201ENST00000515915 61 ntBASIC3.76□□□□□ -1.81
SF3A1Q15459 RNU6-1153P-201ENST00000516760 105 ntBASIC3.76□□□□□ -1.81
SF3A1Q15459 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.76□□□□□ -1.81
SF3A1Q15459 MIR3923-201ENST00000579521 83 ntBASIC3.76□□□□□ -1.81
SF3A1Q15459 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.76□□□□□ -1.81
SF3A1Q15459 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.76□□□□□ -1.81
SF3A1Q15459 Z83843.1-201ENST00000604070 3685 ntBASIC3.76□□□□□ -1.81
SF3A1Q15459 AC093908.1-201ENST00000623125 8092 ntBASIC3.76□□□□□ -1.81
SF3A1Q15459 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
SF3A1Q15459 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
SF3A1Q15459 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SF3A1Q15459 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SF3A1Q15459 RNU6-1159P-201ENST00000362933 107 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 RNU4-76P-201ENST00000364509 141 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 Y_RNA.405-201ENST00000383979 100 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 Y_RNA.451-201ENST00000384200 100 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 Y_RNA.524-201ENST00000384564 100 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 Y_RNA.561-201ENST00000384694 100 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 MIR559-201ENST00000385188 96 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 RNA5SP229-201ENST00000410809 99 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 AC007098.1-201ENST00000420122 367 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 MTCYBP10-201ENST00000424905 650 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.75□□□□□ -1.81
SF3A1Q15459 UBBP3-201ENST00000445497 241 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 AL353752.1-201ENST00000454946 260 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 snoU13.30-201ENST00000458951 104 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 RPS27P29-201ENST00000463110 252 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 TOMM22P6-201ENST00000465035 409 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 RPL30P10-201ENST00000488148 337 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 RNA5SP217-201ENST00000515959 91 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 RNU1-143P-201ENST00000516296 146 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 Y_RNA.706-201ENST00000516933 99 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 RNU6-699P-201ENST00000517081 110 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.75□□□□□ -1.81
SF3A1Q15459 CYP4A27P-201ENST00000567218 190 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 AC090616.3-201ENST00000582184 217 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 MIR5195-201ENST00000583555 115 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 U1.23-201ENST00000610293 146 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 RNU1-68P-201ENST00000615382 146 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 MIR7975-201ENST00000619350 68 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 U1.39-201ENST00000621562 146 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 AC091903.1-201ENST00000624322 454 ntBASIC3.75□□□□□ -1.81
SF3A1Q15459 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
SF3A1Q15459 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.75□□□□□ -1.81
SF3A1Q15459 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SF3A1Q15459 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
SF3A1Q15459 Y_RNA.197-201ENST00000364004 102 ntBASIC3.74□□□□□ -1.81
SF3A1Q15459 RNU6-1180P-201ENST00000364935 107 ntBASIC3.74□□□□□ -1.81
SF3A1Q15459 RNU6-1032P-201ENST00000384100 107 ntBASIC3.74□□□□□ -1.81
SF3A1Q15459 FO393413.1-201ENST00000402892 195 ntBASIC3.74□□□□□ -1.81
SF3A1Q15459 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.74□□□□□ -1.81
SF3A1Q15459 RPS3P1-201ENST00000456781 192 ntBASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms