Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MTCO1P29-201ENST00000496868 288 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 YWHAEP4-201ENST00000505390 198 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.79□□□□□ -1.96
HDAC4P56524 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.79□□□□□ -1.96
HDAC4P56524 CR383656.8-201ENST00000549046 145 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.79□□□□□ -1.96
HDAC4P56524 AC103996.1-201ENST00000555468 102 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 AC005668.1-201ENST00000571142 476 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 MIR5194-201ENST00000582634 120 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 MIR3616-201ENST00000584070 92 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.79□□□□□ -1.96
HDAC4P56524 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.79□□□□□ -1.96
HDAC4P56524 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
HDAC4P56524 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
HDAC4P56524 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
HDAC4P56524 HAUS6P2-201ENST00000433254 2404 ntBASIC2.78□□□□□ -1.96
HDAC4P56524 RNU6-1106P-201ENST00000390845 107 ntBASIC2.78□□□□□ -1.96
HDAC4P56524 RPS29P13-201ENST00000402041 169 ntBASIC2.78□□□□□ -1.96
HDAC4P56524 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
HDAC4P56524 RNA5SP184-201ENST00000411071 108 ntBASIC2.78□□□□□ -1.96
HDAC4P56524 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.78□□□□□ -1.96
HDAC4P56524 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.78□□□□□ -1.96
HDAC4P56524 AC004383.1-201ENST00000438135 289 ntBASIC2.78□□□□□ -1.96
HDAC4P56524 AC096745.1-201ENST00000509945 370 ntBASIC2.78□□□□□ -1.96
HDAC4P56524 RNU6-377P-201ENST00000515965 102 ntBASIC2.78□□□□□ -1.96
HDAC4P56524 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.78□□□□□ -1.96
HDAC4P56524 AC244517.12-201ENST00000623581 663 ntBASIC2.78□□□□□ -1.96
HDAC4P56524 AC099654.5-201ENST00000636479 350 ntBASIC2.78□□□□□ -1.96
HDAC4P56524 MTND5P30-201ENST00000452896 1731 ntBASIC2.78□□□□□ -1.96
HDAC4P56524 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.78□□□□□ -1.97
HDAC4P56524 RNU4-82P-201ENST00000362443 140 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 Y_RNA.61-201ENST00000362835 102 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 RNU6-797P-201ENST00000363101 109 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 Y_RNA.151-201ENST00000363566 112 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 RNU6-105P-201ENST00000363909 104 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 RNA5SP508-201ENST00000411327 119 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 AL645568.3-201ENST00000433683 316 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 FABP5P14-201ENST00000437273 393 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 AP001025.1-201ENST00000486139 332 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.77□□□□□ -1.97
HDAC4P56524 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.77□□□□□ -1.97
HDAC4P56524 AC008549.1-201ENST00000512900 643 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 RN7SKP24-201ENST00000515888 284 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 SNORA31.6-201ENST00000516241 130 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.77□□□□□ -1.97
HDAC4P56524 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.77□□□□□ -1.97
HDAC4P56524 AC010186.2-204ENST00000537668 439 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.77□□□□□ -1.97
HDAC4P56524 AL355375.2-201ENST00000574825 175 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 MIR4635-201ENST00000583759 79 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 MIR4795-201ENST00000584182 89 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 AL356280.1-201ENST00000603614 379 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 AC016727.1-205ENST00000605437 569 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 uc_338.14-201ENST00000613162 166 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 MIR1302-1-201ENST00000637932 143 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
HDAC4P56524 AC080128.1-201ENST00000474389 1917 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 AC135776.4-201ENST00000624300 1904 ntBASIC2.77□□□□□ -1.97
HDAC4P56524 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.77□□□□□ -1.97
HDAC4P56524 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
HDAC4P56524 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HDAC4P56524 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
HDAC4P56524 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.76□□□□□ -1.97
HDAC4P56524 OR56A5-201ENST00000340110 738 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 RNU6-527P-201ENST00000363425 104 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 RNU6-487P-201ENST00000365430 104 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 RNU6-843P-201ENST00000384454 104 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 AL030996.1-201ENST00000411430 235 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 RPS15AP10-201ENST00000432472 382 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 SNAP23P1-201ENST00000433229 246 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 AL513124.1-201ENST00000450410 614 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 AP001324.2-201ENST00000461163 319 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 RPS27P27-201ENST00000498779 255 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 PTP4A1P4-201ENST00000512479 322 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 RNA5SP82-201ENST00000516707 92 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 SNORA31.23-201ENST00000517219 133 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.76□□□□□ -1.97
HDAC4P56524 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.76□□□□□ -1.97
HDAC4P56524 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.76□□□□□ -1.97
HDAC4P56524 CPDP1-201ENST00000579660 283 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 MIR3199-1-201ENST00000582434 88 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 MIR4765-201ENST00000585007 77 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 AL356575.1-201ENST00000603008 283 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 AC009314.1-201ENST00000603871 304 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 RNU6-91P-201ENST00000607774 107 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 AC097372.5-201ENST00000623665 376 ntBASIC2.76□□□□□ -1.97
HDAC4P56524 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.76□□□□□ -1.97
HDAC4P56524 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.75□□□□□ -1.97
HDAC4P56524 RBBP8P1-201ENST00000449447 1844 ntBASIC2.75□□□□□ -1.97
HDAC4P56524 ZNF271P-202ENST00000465539 1970 ntBASIC2.75□□□□□ -1.97
HDAC4P56524 Y_RNA.58-201ENST00000362807 102 ntBASIC2.75□□□□□ -1.97
HDAC4P56524 Y_RNA.154-201ENST00000363624 102 ntBASIC2.75□□□□□ -1.97
HDAC4P56524 RNY3P1-201ENST00000365085 102 ntBASIC2.75□□□□□ -1.97
HDAC4P56524 RNY3-201ENST00000365484 102 ntBASIC2.75□□□□□ -1.97
HDAC4P56524 Y_RNA.490-201ENST00000384413 102 ntBASIC2.75□□□□□ -1.97
HDAC4P56524 MT-TD-201ENST00000387419 68 ntBASIC2.75□□□□□ -1.97
HDAC4P56524 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HDAC4P56524 RNU6-325P-201ENST00000411132 105 ntBASIC2.75□□□□□ -1.97
HDAC4P56524 AC074085.1-201ENST00000413598 418 ntBASIC2.75□□□□□ -1.97
HDAC4P56524 MTND3P23-201ENST00000431980 347 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms