Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 RPL32P28-201ENST00000443577 397 ntBASIC2.54□□□□□ -2
MSH2P43246 AC124916.1-201ENST00000444020 547 ntBASIC2.54□□□□□ -2
MSH2P43246 RNU6-1037P-201ENST00000459571 107 ntBASIC2.54□□□□□ -2
MSH2P43246 AL049873.1-201ENST00000480540 376 ntBASIC2.54□□□□□ -2
MSH2P43246 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.54□□□□□ -2
MSH2P43246 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.54□□□□□ -2
MSH2P43246 RNU4-49P-201ENST00000516080 140 ntBASIC2.54□□□□□ -2
MSH2P43246 AC109329.1-201ENST00000518744 317 ntBASIC2.54□□□□□ -2
MSH2P43246 AP000889.2-201ENST00000532684 490 ntBASIC2.54□□□□□ -2
MSH2P43246 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.54□□□□□ -2
MSH2P43246 AC073410.2-201ENST00000603240 332 ntBASIC2.54□□□□□ -2
MSH2P43246 AC245884.12-201ENST00000615364 59 ntBASIC2.54□□□□□ -2
MSH2P43246 U4atac.1-201ENST00000618345 95 ntBASIC2.54□□□□□ -2
MSH2P43246 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.54□□□□□ -2
MSH2P43246 AC241585.2-209ENST00000638217 143 ntBASIC2.54□□□□□ -2
MSH2P43246 AC099654.14-201ENST00000638599 341 ntBASIC2.54□□□□□ -2
MSH2P43246 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.54□□□□□ -2
MSH2P43246 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.54□□□□□ -2
MSH2P43246 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.53□□□□□ -2
MSH2P43246 SNORD62.1-201ENST00000362541 86 ntBASIC2.53□□□□□ -2
MSH2P43246 RNU6-529P-201ENST00000363383 104 ntBASIC2.53□□□□□ -2
MSH2P43246 Y_RNA.135-201ENST00000363439 95 ntBASIC2.53□□□□□ -2
MSH2P43246 Y_RNA.160-201ENST00000363677 92 ntBASIC2.53□□□□□ -2
MSH2P43246 RNA5SP240-201ENST00000365355 128 ntBASIC2.53□□□□□ -2
MSH2P43246 Y_RNA.390-201ENST00000383932 102 ntBASIC2.53□□□□□ -2
MSH2P43246 RNU1-57P-201ENST00000384491 166 ntBASIC2.53□□□□□ -2
MSH2P43246 MIR544A-201ENST00000384855 91 ntBASIC2.53□□□□□ -2
MSH2P43246 RNU6-510P-201ENST00000391239 108 ntBASIC2.53□□□□□ -2
MSH2P43246 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.53□□□□□ -2
MSH2P43246 SNAP23P1-201ENST00000433229 246 ntBASIC2.53□□□□□ -2
MSH2P43246 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.53□□□□□ -2
MSH2P43246 IFNA20P-201ENST00000436840 528 ntBASIC2.53□□□□□ -2
MSH2P43246 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.53□□□□□ -2
MSH2P43246 RPL30P12-201ENST00000474666 353 ntBASIC2.53□□□□□ -2
MSH2P43246 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.53□□□□□ -2
MSH2P43246 AC025465.4-201ENST00000513422 638 ntBASIC2.53□□□□□ -2
MSH2P43246 RN7SKP132-201ENST00000516001 208 ntBASIC2.53□□□□□ -2
MSH2P43246 AC243972.3-201ENST00000539655 198 ntBASIC2.53□□□□□ -2
MSH2P43246 TRAV32-201ENST00000553993 340 ntBASIC2.53□□□□□ -2
MSH2P43246 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.53□□□□□ -2
MSH2P43246 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.53□□□□□ -2
MSH2P43246 AC011712.1-201ENST00000588959 234 ntBASIC2.53□□□□□ -2
MSH2P43246 AC023043.2-201ENST00000589678 1026 ntBASIC2.53□□□□□ -2
MSH2P43246 AL033523.1-201ENST00000605153 153 ntBASIC2.53□□□□□ -2
MSH2P43246 AC007792.1-201ENST00000623023 402 ntBASIC2.53□□□□□ -2
MSH2P43246 SCARNA15.3-201ENST00000626315 122 ntBASIC2.53□□□□□ -2
MSH2P43246 SCARNA4.1-201ENST00000628597 123 ntBASIC2.53□□□□□ -2
MSH2P43246 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
MSH2P43246 AC005336.3-201ENST00000623833 2679 ntBASIC2.53□□□□□ -2.01
MSH2P43246 Z82209.1-201ENST00000422141 2135 ntBASIC2.53□□□□□ -2.01
MSH2P43246 AC002543.1-201ENST00000299783 1954 ntBASIC2.52□□□□□ -2.01
MSH2P43246 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
MSH2P43246 MTND4P23-201ENST00000447723 1363 ntBASIC2.52□□□□□ -2.01
MSH2P43246 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
MSH2P43246 Y_RNA.212-201ENST00000364177 102 ntBASIC2.52□□□□□ -2.01
MSH2P43246 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.52□□□□□ -2.01
MSH2P43246 RNU6-1013P-201ENST00000384180 107 ntBASIC2.52□□□□□ -2.01
MSH2P43246 AL360182.1-201ENST00000397433 468 ntBASIC2.52□□□□□ -2.01
MSH2P43246 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.52□□□□□ -2.01
MSH2P43246 MTCO3P46-201ENST00000425787 232 ntBASIC2.52□□□□□ -2.01
MSH2P43246 AL161788.1-201ENST00000441805 169 ntBASIC2.52□□□□□ -2.01
MSH2P43246 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.52□□□□□ -2.01
MSH2P43246 RPL39P29-201ENST00000447779 157 ntBASIC2.52□□□□□ -2.01
MSH2P43246 AMD1P1-201ENST00000457220 922 ntBASIC2.52□□□□□ -2.01
MSH2P43246 RNU6-329P-201ENST00000459618 107 ntBASIC2.52□□□□□ -2.01
MSH2P43246 AC116353.2-201ENST00000505332 712 ntBASIC2.52□□□□□ -2.01
MSH2P43246 RPL39P5-202ENST00000512505 151 ntBASIC2.52□□□□□ -2.01
MSH2P43246 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.52□□□□□ -2.01
MSH2P43246 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.52□□□□□ -2.01
MSH2P43246 AC087241.2-201ENST00000535801 324 ntBASIC2.52□□□□□ -2.01
MSH2P43246 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.52□□□□□ -2.01
MSH2P43246 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.52□□□□□ -2.01
MSH2P43246 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.52□□□□□ -2.01
MSH2P43246 uc_338.15-201ENST00000615470 191 ntBASIC2.52□□□□□ -2.01
MSH2P43246 AL159153.1-201ENST00000619688 317 ntBASIC2.52□□□□□ -2.01
MSH2P43246 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.52□□□□□ -2.01
MSH2P43246 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
MSH2P43246 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
MSH2P43246 RNU6-562P-201ENST00000362731 107 ntBASIC2.51□□□□□ -2.01
MSH2P43246 RNA5SP456-201ENST00000364002 114 ntBASIC2.51□□□□□ -2.01
MSH2P43246 Y_RNA.279-201ENST00000364763 95 ntBASIC2.51□□□□□ -2.01
MSH2P43246 SNORD116-11-201ENST00000383882 92 ntBASIC2.51□□□□□ -2.01
MSH2P43246 RNU1-148P-201ENST00000384472 162 ntBASIC2.51□□□□□ -2.01
MSH2P43246 RNU6-1222P-201ENST00000384615 107 ntBASIC2.51□□□□□ -2.01
MSH2P43246 MIR186-201ENST00000384988 86 ntBASIC2.51□□□□□ -2.01
MSH2P43246 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.51□□□□□ -2.01
MSH2P43246 AL645568.3-201ENST00000433683 316 ntBASIC2.51□□□□□ -2.01
MSH2P43246 MTND4LP16-201ENST00000440828 295 ntBASIC2.51□□□□□ -2.01
MSH2P43246 AC096745.1-201ENST00000509945 370 ntBASIC2.51□□□□□ -2.01
MSH2P43246 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.51□□□□□ -2.01
MSH2P43246 AC096725.1-201ENST00000514266 313 ntBASIC2.51□□□□□ -2.01
MSH2P43246 RNU6-1088P-201ENST00000516850 104 ntBASIC2.51□□□□□ -2.01
MSH2P43246 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.51□□□□□ -2.01
MSH2P43246 SCOCP1-201ENST00000554676 349 ntBASIC2.51□□□□□ -2.01
MSH2P43246 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.51□□□□□ -2.01
MSH2P43246 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.51□□□□□ -2.01
MSH2P43246 RPL30P11-203ENST00000598995 310 ntBASIC2.51□□□□□ -2.01
MSH2P43246 AL713866.2-201ENST00000603579 219 ntBASIC2.51□□□□□ -2.01
MSH2P43246 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
MSH2P43246 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 258.4 ms