Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SCARNA4-202ENST00000625402 129 ntBASIC1.16□□□□□ -2.22
COL18A1P39060 AC092192.1-201ENST00000633154 1018 ntBASIC1.16□□□□□ -2.22
COL18A1P39060 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.22
COL18A1P39060 SNORD115-3-201ENST00000363100 82 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
COL18A1P39060 MIR1283-2-201ENST00000408621 87 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 RNU2-39P-201ENST00000410604 198 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 MTCO2P8-201ENST00000412213 658 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 MTCYBP39-201ENST00000437562 491 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 MTND5P2-201ENST00000442927 1142 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 DUXAP8-207ENST00000456786 622 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 RPL30P1-201ENST00000488676 339 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.15□□□□□ -2.23
COL18A1P39060 RN7SKP179-201ENST00000516126 217 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.15□□□□□ -2.23
COL18A1P39060 MIR5692A1-201ENST00000580523 69 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 CLIC4P2-201ENST00000601934 717 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 AL078605.1-201ENST00000603529 500 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 AL359999.1-201ENST00000604513 294 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 AL139286.2-201ENST00000606838 396 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 AL391834.2-201ENST00000609982 546 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 AC092106.3-201ENST00000611308 722 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 MIR6513-201ENST00000621188 64 ntBASIC1.15□□□□□ -2.23
COL18A1P39060 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
COL18A1P39060 AL391994.1-201ENST00000254724 282 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 MIR330-201ENST00000362196 94 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 RNU1-58P-201ENST00000362413 163 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 SNORD3E-201ENST00000362899 217 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 Y_RNA.97-201ENST00000363094 102 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 Y_RNA.258-201ENST00000364613 105 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 RNU6-190P-201ENST00000384154 102 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 RNU6-1179P-201ENST00000384667 107 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 AC068050.1-201ENST00000394891 380 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.14□□□□□ -2.23
COL18A1P39060 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC1.14□□□□□ -2.23
COL18A1P39060 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC1.14□□□□□ -2.23
COL18A1P39060 AL009048.1-201ENST00000450437 298 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 MTCO2P29-201ENST00000465212 189 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 AC105313.1-201ENST00000509121 353 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC1.14□□□□□ -2.23
COL18A1P39060 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.14□□□□□ -2.23
COL18A1P39060 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC1.14□□□□□ -2.23
COL18A1P39060 AC091489.2-201ENST00000566263 604 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.14□□□□□ -2.23
COL18A1P39060 MTND1P8-201ENST00000571424 950 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 MIR5697-201ENST00000578045 78 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 AC012065.4-201ENST00000602445 679 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 CYP2C61P-201ENST00000604072 290 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 AL031775.1-201ENST00000607014 887 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.14□□□□□ -2.23
COL18A1P39060 MIR126-201ENST00000362291 85 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 RNU6-371P-201ENST00000364283 108 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 RNU6-716P-201ENST00000365621 103 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 SNORA75B-201ENST00000384053 137 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 MIR10A-201ENST00000385043 110 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 MIR1262-201ENST00000408276 93 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 RNA5SP111-201ENST00000411386 101 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.13□□□□□ -2.23
COL18A1P39060 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.13□□□□□ -2.23
COL18A1P39060 MTCYBP5-201ENST00000423752 1135 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 AC119618.1-201ENST00000434191 222 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.13□□□□□ -2.23
COL18A1P39060 ZNF736P1Y-201ENST00000440402 1276 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC1.13□□□□□ -2.23
COL18A1P39060 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC1.13□□□□□ -2.23
COL18A1P39060 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.13□□□□□ -2.23
COL18A1P39060 AC112206.3-201ENST00000514578 389 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 OR4G2P-201ENST00000328113 903 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 U8.3-201ENST00000363321 132 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 SNORD14D-201ENST00000384390 87 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
COL18A1P39060 RNU6-1176P-201ENST00000390955 107 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 RAP1BP3-201ENST00000407180 549 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC1.13□□□□□ -2.23
COL18A1P39060 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.13□□□□□ -2.23
COL18A1P39060 AC010587.1-201ENST00000505809 469 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 AC117522.1-201ENST00000509821 380 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 SNORA43.2-201ENST00000516652 128 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 AP003392.2-201ENST00000527269 208 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.13□□□□□ -2.23
COL18A1P39060 AC018630.3-201ENST00000542637 96 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC1.13□□□□□ -2.23
COL18A1P39060 AC022254.1-201ENST00000567857 235 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 MIR548AC-201ENST00000585049 88 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 AC004908.3-201ENST00000610248 625 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 AL159153.1-201ENST00000619688 317 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 AC009878.1-201ENST00000621819 340 ntBASIC1.13□□□□□ -2.23
COL18A1P39060 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC1.13□□□□□ -2.23
COL18A1P39060 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
COL18A1P39060 RNU6-809P-201ENST00000384461 107 ntBASIC1.12□□□□□ -2.23
COL18A1P39060 MIR150-201ENST00000385048 84 ntBASIC1.12□□□□□ -2.23
COL18A1P39060 FTH1P12-201ENST00000432137 551 ntBASIC1.12□□□□□ -2.23
COL18A1P39060 AL512286.1-201ENST00000439244 400 ntBASIC1.12□□□□□ -2.23
COL18A1P39060 AC004854.1-201ENST00000440356 349 ntBASIC1.12□□□□□ -2.23
COL18A1P39060 AL606662.1-201ENST00000445763 553 ntBASIC1.12□□□□□ -2.23
COL18A1P39060 RNU6-333P-201ENST00000459117 107 ntBASIC1.12□□□□□ -2.23
COL18A1P39060 AC005908.1-201ENST00000468701 347 ntBASIC1.12□□□□□ -2.23
COL18A1P39060 RPL30P6-201ENST00000475925 342 ntBASIC1.12□□□□□ -2.23
COL18A1P39060 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.12□□□□□ -2.23
COL18A1P39060 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms