Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL590002.1-201ENST00000406554 418 ntBASIC3.14□□□□□ -1.91
HMGB1P09429 MIR1283-2-201ENST00000408621 87 ntBASIC3.14□□□□□ -1.91
HMGB1P09429 AL356379.1-201ENST00000414105 126 ntBASIC3.14□□□□□ -1.91
HMGB1P09429 AL359672.1-201ENST00000442302 409 ntBASIC3.14□□□□□ -1.91
HMGB1P09429 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.14□□□□□ -1.91
HMGB1P09429 HMGN2P18-201ENST00000450680 270 ntBASIC3.14□□□□□ -1.91
HMGB1P09429 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.14□□□□□ -1.91
HMGB1P09429 U8.21-201ENST00000459536 136 ntBASIC3.14□□□□□ -1.91
HMGB1P09429 RPL38P4-201ENST00000502376 214 ntBASIC3.14□□□□□ -1.91
HMGB1P09429 AC025465.4-201ENST00000513422 638 ntBASIC3.14□□□□□ -1.91
HMGB1P09429 RNU6-506P-201ENST00000516553 94 ntBASIC3.14□□□□□ -1.91
HMGB1P09429 ELOCP31-201ENST00000540463 467 ntBASIC3.14□□□□□ -1.91
HMGB1P09429 PRELID2P1-201ENST00000552837 301 ntBASIC3.14□□□□□ -1.91
HMGB1P09429 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.14□□□□□ -1.91
HMGB1P09429 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.14□□□□□ -1.91
HMGB1P09429 AC130454.1-201ENST00000622948 401 ntBASIC3.14□□□□□ -1.91
HMGB1P09429 AC099654.12-201ENST00000639868 649 ntBASIC3.14□□□□□ -1.91
HMGB1P09429 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
HMGB1P09429 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HMGB1P09429 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC3.13□□□□□ -1.91
HMGB1P09429 Y_RNA.41-201ENST00000362646 102 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 Y_RNA.99-201ENST00000363138 105 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 RNU6-1317P-201ENST00000364582 104 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 RNU6-378P-201ENST00000384324 107 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 MIR514A2-201ENST00000385131 88 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 MIR514A3-201ENST00000385132 88 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 MIR676-201ENST00000390702 67 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 RNA5SP465-201ENST00000391195 109 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 MIR208B-201ENST00000401172 77 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
HMGB1P09429 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC3.13□□□□□ -1.91
HMGB1P09429 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.13□□□□□ -1.91
HMGB1P09429 AL353689.1-201ENST00000438895 199 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.13□□□□□ -1.91
HMGB1P09429 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC3.13□□□□□ -1.91
HMGB1P09429 CYP4A27P-201ENST00000567218 190 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 AC010525.2-201ENST00000590920 195 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 AC005000.2-201ENST00000605468 310 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 RNU6-89P-201ENST00000606519 100 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 PCGEM1.1-201ENST00000613431 131 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC3.13□□□□□ -1.91
HMGB1P09429 SNORA43.4-201ENST00000629559 138 ntBASIC3.13□□□□□ -1.91
HMGB1P09429 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
HMGB1P09429 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.13□□□□□ -1.91
HMGB1P09429 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC3.12□□□□□ -1.91
HMGB1P09429 RNU1-58P-201ENST00000362413 163 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 RNU6-227P-201ENST00000362865 103 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 Y_RNA.373-201ENST00000365600 103 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
HMGB1P09429 SNORA11.1-201ENST00000408133 129 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 AC096664.2-201ENST00000411843 406 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC3.12□□□□□ -1.91
HMGB1P09429 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.12□□□□□ -1.91
HMGB1P09429 ERLEC1P1-201ENST00000433806 578 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 AC011816.1-201ENST00000441346 546 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 RPL23AP6-201ENST00000446637 472 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 RPL23AP3-201ENST00000453844 468 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.12□□□□□ -1.91
HMGB1P09429 AMD1P1-201ENST00000457220 922 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 RNA5SP57-201ENST00000459463 123 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 AC021146.2-201ENST00000504736 556 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.12□□□□□ -1.91
HMGB1P09429 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.12□□□□□ -1.91
HMGB1P09429 RNA5SP282-201ENST00000516355 108 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 AL157687.1-201ENST00000554853 619 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 BNIP3P22-201ENST00000593399 556 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 AC012557.2-201ENST00000605919 418 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 AF250324.2-201ENST00000608299 610 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 DISC2.1-201ENST00000612827 205 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 AC015540.1-201ENST00000615828 501 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 AL450472.1-202ENST00000637286 180 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 AC068137.3-201ENST00000639191 341 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 AC008555.8-201ENST00000623602 2168 ntBASIC3.12□□□□□ -1.91
HMGB1P09429 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.12□□□□□ -1.91
HMGB1P09429 AL359851.1-201ENST00000569460 4997 ntBASIC3.11□□□□□ -1.91
HMGB1P09429 RNA5SP201-201ENST00000410316 124 ntBASIC3.11□□□□□ -1.91
HMGB1P09429 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.11□□□□□ -1.91
HMGB1P09429 AL139413.1-201ENST00000421309 217 ntBASIC3.11□□□□□ -1.91
HMGB1P09429 MTCO2P7-201ENST00000446518 666 ntBASIC3.11□□□□□ -1.91
HMGB1P09429 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.11□□□□□ -1.91
HMGB1P09429 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC3.11□□□□□ -1.91
HMGB1P09429 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.11□□□□□ -1.91
HMGB1P09429 AK6P1-201ENST00000540219 478 ntBASIC3.11□□□□□ -1.91
HMGB1P09429 AC078814.3-201ENST00000553036 491 ntBASIC3.11□□□□□ -1.91
HMGB1P09429 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.11□□□□□ -1.91
HMGB1P09429 FER-210ENST00000628534 558 ntTSL 5 BASIC3.11□□□□□ -1.91
HMGB1P09429 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
HMGB1P09429 AC080100.1-201ENST00000624239 5356 ntBASIC3.11□□□□□ -1.91
HMGB1P09429 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HMGB1P09429 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
HMGB1P09429 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
HMGB1P09429 RNU6-23P-201ENST00000363283 107 ntBASIC3.1□□□□□ -1.91
HMGB1P09429 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HMGB1P09429 MIR450B-201ENST00000401182 78 ntBASIC3.1□□□□□ -1.91
HMGB1P09429 AC012306.1-201ENST00000423267 114 ntBASIC3.1□□□□□ -1.91
HMGB1P09429 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.1□□□□□ -1.91
HMGB1P09429 RPL23AP83-201ENST00000434984 473 ntBASIC3.1□□□□□ -1.91
HMGB1P09429 AC005741.1-201ENST00000511094 432 ntBASIC3.1□□□□□ -1.91
HMGB1P09429 AC092436.3-201ENST00000511788 257 ntBASIC3.1□□□□□ -1.91
HMGB1P09429 SNORA31.11-201ENST00000516528 139 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms