Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC079140.5-201ENST00000507882 310 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXD4P09016 RNU5F-8P-201ENST00000515941 111 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 Y_RNA.687-201ENST00000516558 91 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 SNORA31.18-201ENST00000517043 134 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 AC087854.1-201ENST00000519706 414 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 AC105029.1-201ENST00000520250 669 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 IGKV3-31-201ENST00000523109 329 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.23□□□□□ -2.05
HOXD4P09016 RAB11AP2-201ENST00000545905 639 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 AC005668.1-201ENST00000571142 476 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 MIR4648-201ENST00000580107 72 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 MIR4769-201ENST00000584126 77 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 AC023043.2-201ENST00000589678 1026 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-6P-201ENST00000606623 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 AL138726.1-201ENST00000614873 333 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 AC104985.2-201ENST00000620598 500 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 Z69720.2-201ENST00000624755 279 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.23□□□□□ -2.05
HOXD4P09016 AC010329.5-201ENST00000623497 2174 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.22□□□□□ -2.05
HOXD4P09016 Y_RNA.135-201ENST00000363439 95 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 Y_RNA.529-201ENST00000384586 119 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.22□□□□□ -2.05
HOXD4P09016 WARS2P1-201ENST00000429678 537 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXD4P09016 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXD4P09016 AL359672.1-201ENST00000442302 409 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 AC093019.1-201ENST00000443135 252 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXD4P09016 MTND1P11-201ENST00000456661 876 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 AMD1P1-201ENST00000457220 922 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXD4P09016 RN7SL636P-201ENST00000497504 294 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
HOXD4P09016 AC008526.1-201ENST00000509149 338 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.22□□□□□ -2.05
HOXD4P09016 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.22□□□□□ -2.05
HOXD4P09016 Y_RNA.682-201ENST00000516457 100 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
HOXD4P09016 COPS8P3-201ENST00000526024 482 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 AP005639.2-201ENST00000527592 928 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.22□□□□□ -2.05
HOXD4P09016 LINC00933-203ENST00000559812 219 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXD4P09016 AC090616.3-201ENST00000582184 217 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 FGF7P1-201ENST00000582820 288 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.22□□□□□ -2.05
HOXD4P09016 AL117336.2-201ENST00000602435 335 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 AC087045.1-201ENST00000605856 382 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 AL022345.1-201ENST00000607292 135 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.22□□□□□ -2.05
HOXD4P09016 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 uc_338.15-201ENST00000615470 191 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 MIR6134-201ENST00000617606 109 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 RMST_7.1-201ENST00000621935 268 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 AC138627.2-201ENST00000624202 601 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 AC112487.2-201ENST00000637950 304 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
HOXD4P09016 AC016717.2-201ENST00000609089 5141 ntBASIC2.22□□□□□ -2.05
HOXD4P09016 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.22□□□□□ -2.05
HOXD4P09016 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.21□□□□□ -2.06
HOXD4P09016 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.21□□□□□ -2.06
HOXD4P09016 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
HOXD4P09016 RNU6-1083P-201ENST00000384022 107 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 SNORA51.11-201ENST00000384442 131 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 MIR518C-201ENST00000384822 101 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.21□□□□□ -2.06
HOXD4P09016 AL590632.1-201ENST00000424289 371 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 RPS12P2-201ENST00000439728 269 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 HMGN2P10-201ENST00000448085 265 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 AL353705.4-201ENST00000449661 238 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXD4P09016 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXD4P09016 BTF3P15-201ENST00000455606 336 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 MTND4P17-201ENST00000470444 350 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 MRPL42P6-201ENST00000486397 371 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 Y_RNA.691-201ENST00000516611 103 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 RNU6-566P-201ENST00000516790 107 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 SNORD19.2-201ENST00000516978 73 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.21□□□□□ -2.06
HOXD4P09016 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.21□□□□□ -2.06
HOXD4P09016 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.21□□□□□ -2.06
HOXD4P09016 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXD4P09016 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXD4P09016 RPS3AP23-202ENST00000574601 686 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 AC243960.4-201ENST00000600532 288 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 AC008121.1-201ENST00000603244 268 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 ELOCP5-201ENST00000604924 333 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 AL132765.2-201ENST00000610812 351 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 AC010378.1-201ENST00000619270 362 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 MIR7515-201ENST00000637837 67 ntBASIC2.21□□□□□ -2.06
HOXD4P09016 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.21□□□□□ -2.06
HOXD4P09016 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.2□□□□□ -2.06
HOXD4P09016 AC010889.1-201ENST00000566193 2666 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 Y_RNA.356-201ENST00000365475 113 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
HOXD4P09016 SNORD116-11-201ENST00000383882 92 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 RNU6-128P-201ENST00000383976 107 ntBASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 132.3 ms