Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 Y_RNA.226-201ENST00000364337 114 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 RAP1BP3-201ENST00000407180 549 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 RNU4-22P-201ENST00000411058 166 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 TRIM60P10Y-201ENST00000425589 751 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 MTND5P2-201ENST00000442927 1142 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 RNA5SP269-201ENST00000459032 137 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 AC114982.1-201ENST00000469402 321 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 AC079140.3-201ENST00000511111 550 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 RNA5SP220-201ENST00000516298 104 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 RNU7-40P-201ENST00000516397 64 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 RNA5SP102-201ENST00000516865 106 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 AC019176.1-201ENST00000518519 225 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 MZT1P2-201ENST00000604387 248 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 FAM71BP1-201ENST00000604431 523 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 AC090578.1-201ENST00000604955 591 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 AL020996.3-201ENST00000606617 222 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 AP002360.4-201ENST00000606980 481 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 AC004492.1-201ENST00000607036 742 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 AL158211.2-201ENST00000607282 395 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 MIR8065-201ENST00000620577 100 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 AL359740.1-201ENST00000624340 592 ntBASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.65□□□□□ -2.31
TRAV1-1A0A0B4J248 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 HSBP1P2-201ENST00000299671 229 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 RNU6-78P-201ENST00000362897 107 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 RNU6-1019P-201ENST00000364424 107 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 RNU6-1065P-201ENST00000384513 106 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 RNU6-1179P-201ENST00000384667 107 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 AC069282.1-201ENST00000411911 526 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 MTCO1P21-201ENST00000416634 589 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 POLR2J4-204ENST00000418424 324 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 AC013410.2-201ENST00000422627 201 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 MTCYBP39-201ENST00000437562 491 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 PGBD4P5-201ENST00000445958 426 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 RPS4XP11-201ENST00000446897 772 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 AL360271.2-201ENST00000447710 161 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 RPS27P1-201ENST00000450552 247 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 RPL31P3-201ENST00000458430 332 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 ATP5EP1-201ENST00000510257 156 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 MTND2P31-201ENST00000512602 616 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 RNU1-86P-201ENST00000516108 154 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 RNU6-276P-201ENST00000516114 96 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 RNU1-107P-201ENST00000516617 154 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 SUMO2P18-201ENST00000518873 252 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 HMGB1P33-201ENST00000563485 527 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 MIR4452-201ENST00000583004 71 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 MIR4653-201ENST00000585107 83 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 MTND3P19-201ENST00000603825 345 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 AC008945.2-201ENST00000606056 604 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 RMST_4.1-201ENST00000616886 107 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 AP002782.1-201ENST00000623107 614 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 AC099654.5-201ENST00000636479 350 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 AC103706.2-201ENST00000638080 240 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 AL445523.1-201ENST00000451184 1362 ntBASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.64□□□□□ -2.31
TRAV1-1A0A0B4J248 Y_RNA.269-201ENST00000364685 89 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 RNU6-142P-201ENST00000384019 107 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 MIR532-201ENST00000385025 91 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 MIR518E-201ENST00000385252 88 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 SNORA12.2-201ENST00000391040 156 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 SNORA12-201ENST00000391162 147 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 RPS20P2-201ENST00000402520 389 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 RPS3AP37-201ENST00000419176 745 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 AC006366.1-201ENST00000422002 759 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 ZNF736P5Y-201ENST00000451173 805 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 MTND1P12-201ENST00000455231 147 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 AC145146.1-201ENST00000496370 254 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 RNU6-113P-201ENST00000516653 101 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 MTND2P7-201ENST00000521337 640 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 AC011979.2-201ENST00000527568 352 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 AC136932.1-201ENST00000574771 208 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 MIR3118-1-201ENST00000581787 76 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 DEFB131E-202ENST00000602581 683 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 AC112187.2-201ENST00000604345 283 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 AC069114.2-201ENST00000604699 304 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 MIR6857-201ENST00000613267 93 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 AC026585.1-201ENST00000619582 524 ntBASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.63□□□□□ -2.31
TRAV1-1A0A0B4J248 Y_RNA.122-201ENST00000363331 96 ntBASIC0.62□□□□□ -2.31
TRAV1-1A0A0B4J248 RNY4P16-201ENST00000364768 94 ntBASIC0.62□□□□□ -2.31
TRAV1-1A0A0B4J248 RNU6-1-201ENST00000383898 107 ntBASIC0.62□□□□□ -2.31
TRAV1-1A0A0B4J248 RNU6-42P-201ENST00000384165 107 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms