Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 AC243964.1-201ENST00000441814 261 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 MIR2053-201ENST00000459295 91 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 CKS1BP7-201ENST00000522230 235 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 AC107016.2-201ENST00000547968 190 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 SUB1P3-201ENST00000564581 315 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 RNU6-91P-201ENST00000607774 107 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 AC107871.2-201ENST00000612894 502 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 AC241585.2-209ENST00000638217 143 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 AC010889.1-201ENST00000566193 2666 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 Y_RNA.252-201ENST00000364556 101 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 Y_RNA.463-201ENST00000384271 102 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 RNU2-49P-201ENST00000410666 184 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 AC007969.2-201ENST00000441891 191 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 RPL17P19-201ENST00000489069 552 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 AC022493.2-201ENST00000506122 481 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 SCARNA15.1-201ENST00000516384 125 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 RNU5B-3P-201ENST00000516601 115 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 Y_RNA.711-201ENST00000516993 102 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 SNORA31.23-201ENST00000517219 133 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 RNU6-988P-201ENST00000519081 107 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 MIR5696-201ENST00000578474 85 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 AC005034.5-201ENST00000604219 466 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 ZNF299P-201ENST00000406845 1804 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 AC092593.1-201ENST00000515413 1815 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 AC096644.4-201ENST00000563417 2912 ntBASIC3.37□□□□□ -1.87
LIMCH1Q9UPQ0 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 RNA5SP374-201ENST00000362939 125 ntBASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 RNA5SP387-201ENST00000364226 106 ntBASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 RNU6-851P-201ENST00000384565 107 ntBASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 RNA5SP354-201ENST00000391247 136 ntBASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 AC096664.2-201ENST00000411843 406 ntBASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 EIF1AXP1-201ENST00000419267 435 ntBASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 AC099799.1-201ENST00000439809 192 ntBASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 AL163540.1-201ENST00000485382 386 ntBASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 AC096576.1-201ENST00000489014 359 ntBASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 ELOCP31-201ENST00000540463 467 ntBASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 AC097372.5-201ENST00000623665 376 ntBASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 MTND5P30-201ENST00000452896 1731 ntBASIC3.36□□□□□ -1.87
LIMCH1Q9UPQ0 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 MIR208A-201ENST00000362287 71 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 Y_RNA.5-201ENST00000362334 102 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 Y_RNA.28-201ENST00000362554 111 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 AC117470.1-201ENST00000381974 330 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 Y_RNA.428-201ENST00000384078 102 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 RNA5SP344-201ENST00000411081 104 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 NUP35P1-201ENST00000422734 947 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 AC018865.2-201ENST00000423631 129 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 AL035666.1-201ENST00000446195 348 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 BX510359.1-201ENST00000456973 237 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 AC022447.4-201ENST00000504053 364 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 RNA5SP385-201ENST00000515947 110 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 RNA5SP76-201ENST00000516277 87 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 AP002404.1-201ENST00000532005 451 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 AC022432.1-201ENST00000595739 310 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 AL391813.1-201ENST00000603098 260 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 7SK.7-201ENST00000603504 247 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 AC009318.2-201ENST00000610917 651 ntBASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LIMCH1Q9UPQ0 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 AC009541.1-201ENST00000438279 2662 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 RNY1P16-201ENST00000363063 111 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 RNU6-799P-201ENST00000363567 107 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 MIR147B-201ENST00000390185 80 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 MIR767-201ENST00000390228 109 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 AC243428.1-201ENST00000421099 264 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.34□□□□□ -1.87
LIMCH1Q9UPQ0 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms